Protein Overview: gi|6686356, gi|2...

General Information:
Name(s) found:	gi\|6686356 [NCBI NR] gi\|2131097 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|6686356\|sp\|P47098.2\|YJ11B_YEAST RecName: Full=Transposon Ty1-JR1 Gag-Pol polyprotein; AltName: Full=Gag-Pol-p199; AltName: Full=Transposon Ty1 TYA-TYB polyprotein; AltName: Full=TY1A-TY1B; AltName: Full=p190; Contains: RecName: Full=Capsid protein; Sho [NCBI NR] gi\|2131097\|emb\|CAA89553.1\| TY1B [Saccharomyces cerevisiae] [NCBI NR] (P47098) Transposon Ty1 protein B [Swiss-Prot] Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-JR1 PE=1 SV=2 [Swiss-Prot] TY1B [Saccharomyces cerevisiae]gi\|6686356\|sp\|P47098\|YJZ7_YEAST Transposon Ty1 protein B [nrdb_11152004_Chlamydomonas] TY1B [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Transposon Ty1 protein B [nr-271106-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	1755 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA] cytoplasm [IEA] retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS] transposition [IEA] proteolysis [IEA] DNA integration [IEA] DNA recombination [IEA] viral procapsid maturation [IEA]
Molecular Function:	nucleotidyltransferase activity [IEA] aspartic-type endopeptidase activity [IEA] ribonuclease activity [ISS] peptidase activity [IEA][ISS] nucleotide binding [IEA] nucleic acid binding [IEA] DNA binding [IEA] ribonuclease H activity [IEA] ATP binding [IEA] DNA-directed DNA polymerase activity [IEA][ISS] RNA-directed DNA polymerase activity [IEA][ISS] protein binding [ISS] RNA binding [IEA][ISS] catalytic activity [IEA] metal ion binding [IEA] endonuclease activity [IEA] nuclease activity [IEA] transferase activity [IEA] hydrolase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS HISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLTLGQELT ESTVNHTNHS DDELPGHLLL DSGASRTLIR SAHHIHSASS 480
  481 NPDINVVDAQ KRNIPINAIG DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC 540
  541 FTKNVLERSD GTVLAPIVQY GDFYWVSKRY LLPSNISVPT INNVHTSEST RKYPYPFIHR 600
  601 MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH IKGSRLKYQN 660
  661 SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV YPLHDRREDS ILDVFTTILA 720
  721 FIKNQFQASV LVIQMDRGSE YTNRTLHKFL EKNGITPCYT TTADSRAHGV AERLNRTLLD 780
  781 DCRTQLQCSG LPNHLWFSAI EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV 840
  841 IVNDHNPNSK IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN 900
  901 YDALTFDEDL NRLTASYQSF IASNEIQESN DLNIESDHDF QSDIELHPEQ PRNVLSKAVS 960
  961 PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS KKRSSTPQIS NIESTGSGGM1020
 1021 HKLNVPLLAP MSQSNTHESS HASKSKDFRH SDSYSENETN HTNVPISSTG GTNNKTVPQI1080
 1081 SDQETEKRII HRSPSIDASP PENNSSHNIV PIKTPTTVSE QNTEESIIAD LPLPDLPPES1140
 1141 PTEFPDPFKE LPPINSHQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN1200
 1201 MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY IEAYHKEVNQ1260
 1261 LLKMKTWDTD EYYDRKEIDP KRVINSMFIF NKKRDGTHKA RFVARGDIQH PDTYDTGMQS1320
 1321 NTVHHYALMT SLSLALDNNY YITQLDISSA YLYADIKEEL YIRPPPHLGM NDKLIRLKKS1380
 1381 HYGLKQSGAN WYETIKSYLI KQCGMEEVRG WSCVFKNSQV TICLFVDDMI LFSKDLNANK1440
 1441 KIITTLKKQY DTKIINLGES DNEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL1500
 1501 NPKGRKLSAP GQPGLYIDQD ELEIDEDEYK EKVHEMQKLI GLASYVGYKF RFDLLYYINT1560
 1561 LAQHILFPSR QVLDMTYELI QFMWDTRDKQ LIWHKNKPTE PDNKLVAISD ASYGNQPYYK1620
 1621 SQIGNIFLLN GKVIGGKSTK ASLTCTSTTE AEIHAISESV PLLNNLSYLI QELNKKPIIK1680
 1681 GLLTDSRSTI SIIKSTNEEK FRNRFFGTKA MRLRDEVSGN NLYVYYIETK KNIADVMTKP1740
 1741 LPIKTFKLLT NKWIH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	CEP3	sample cbf3 from feb 2005	Sandall S, et all (2006)
View Run	ZDS1	Sample 2- cpn2 from june 2005	McCusker D, et al (2007)
View Run	ZDS1	Sample 3 - cpn + atp, from june 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi 1 with ha tag from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi1 with gst from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Protein Overview: gi|6686356, gi|2...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: