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Protein Overview: RSM28

General Information:
Name(s) found: RSM28 / YDR494W [SGD]
Description(s) found:
Found 25 descriptions.
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  • Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 361 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [IDALink to PubMed article]
    Biological Process: translational initiation [IGILink to PubMed article]
    translation [IGILink to PubMed article][IPILink to PubMed article]
    Molecular Function: structural constituent of ribosome [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSMFRCVS RAHYSTSVTE DFINSILARA QEATAKASSN ALKLDKMKEG RMQNKRRNGN  60
   61 QNRNSMNNKE SRGREGNQGE RNMRLKNRSS DSVRANKQQW NKGANTSFVK NPTGNTVVMQ 120
  121 PQFKKMQNGK NNLKGDARVE DDLLDVFNSS MEQKPVNFNG TPKSKARFQK KSHILTASKR 180
  181 RKAPQQQLQK VIKRPVSSEY VLEEPTPLSL LEYTPQVFPT KESRLVNFTL DSLKKSNYPI 240
  241 YRSPNLGILK VHDFTLNTPN FGKYTPGSSL IFAKEPQLQN LLIEEDPEDF HRQVTGEYQL 300
  301 LKPYVKKDFE KLTKSKDTVS KLVQNSQVVR LSLQSVVMGS EEKKLVYDVC SGMKPISELQ 360
  361 Q

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) MRP4 MRPS35 MRPS5 RSM18 RSM28
    View Details Krogan NJ, et al. (2006) CBF1 FYV4 MAM33 MRP1 MRP10 MRP17 MRP21 MRP4 MRP51 MRPL8 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS9 NAM9 NCL1 PET123 RIB4 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 SVL3 SWS2 YDR124W YJR096W YKL151C YSP1
    View Details Qiu et al. (2008) MRP1 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRP7 MRPL17 MRPL22 MRPL31 MRPL32 MRPL6 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM18 RSM19 RSM23 RSM24 RSM25 RSM26 RSM28 RSM7 SWS2 VAR1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..244] deduced N/A No confident structure predictions are available.
    2 View Details [245..361] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle