YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM28
Organism:	Saccharomyces cerevisiae
Length:	361 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM28.

Description	E-value	Query Range	Subject Range
gi\|44984887, gi\|... - gi\|45198858\|ref\|NP_985887.1\| AFR340Wp [Ashbya gossypii ATCC 10895], gi\|44984887\|gb\|AAS53711.1\| AFR34... gi\|44984887 - gi\|44984887\|gb\|AAS53711.1\| AFR340Wp [Ashbya gossypii ATCC 10895]	448.0	[0..1]	[358..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSMFRCVS RAHYSTSVTE DFINSILARA QEATAKASSN ALKLDKMKEG RMQNKRRNGN  60
   61 QNRNSMNNKE SRGREGNQGE RNMRLKNRSS DSVRANKQQW NKGANTSFVK NPTGNTVVMQ 120
  121 PQFKKMQNGK NNLKGDARVE DDLLDVFNSS MEQKPVNFNG TPKSKARFQK KSHILTASKR 180
  181 RKAPQQQLQK VIKRPVSSEY VLEEPTPLSL LEYTPQVFPT KESRLVNFTL DSLKKSNYPI 240
  241 YRSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [245-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLGILKVHDF TLNTPNFGKY TPGSSLIFAK EPQLQNLLIE EDPEDFHRQV TGEYQLLKPY  60
   61 VKKDFEKLTK SKDTVSKLVQ NSQVVRLSLQ SVVMGSEEKK LVYDVCSGMK PISELQQ