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Protein Overview: YLR413W

General Information:
Name(s) found: YLR413W [SGD]
Description(s) found:
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  • gi|74644970|sp|Q06689.1|YL413_YEAST RecName: Full=Cell membrane protein YLR413W; Flags: Precursor [NCBI NR]
  • gi|632673|gb|AAB67494.1| Ylr413wp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323445|ref|NP_013517.1| Putative protein of unknown function; YLR413W is not an essential gene; Ylr413wp [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S59379 probable membrane protein YLR413w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Cell membrane protein YLR413W OS=Saccharomyces cerevisiae GN=YLR413W PE=1 SV=1 [Swiss-Prot]
  • Protein of unknown function localised to cell periphery [mips]
  • Putative protein of unknown function; YLR413W is not an essential gene [SGD]
  • YLR413W, Chr XII from 951151-953178 [yeast_orfs2]
  • Chr XII from 951151-953178 [yeastorf3.fasta]
  • >Q06689 (Q06689) Chromosome XII COSMID 9931 [4932.FASTACCERV.txt]
  • YLR413W SGDID:S0004405, Chr XII from 951152-953179, Uncharacterized ORF [yeastflysequest.fasta]
  • Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery [Saccharomyces cerevisiae]gi|1363752|pir||S59379 probable membrane protein YLR413w - yeast (Saccharomyces cerevisiae)gi|632673|gb|AAB67494.1| Ylr [nrdb_11152004_Chlamydomonas]
  • (Q06689) Ylr413wp [cerv4932.FASTAC]
  • YLR413W SGDID:S000004405, Chr XII from 951152-953179, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YLR413W SGDID:S000004405, Chr XII from 951153-953180, Uncharacterized ORF, "Putative protein of unknown function; YLR413W is not an essential gene" [yeast-contam.fasta]
  • Ylr413wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Putative protein of unknown function; YLR413W is not an essential gene; Ylr413wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Cell membrane protein YLR413W precursor [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Cell membrane protein YLR413W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR413W PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YLR413W SGDID:S000004405, Chr XII from 951156-953183, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; YLR413W is not an essential gene" [yeast-030211-contam.fasta]
  • INA1 SGDID:S000004405, Chr XII from 951156-953183, Genome Release 64-2-1, Verified ORF, "Putative protein of unknown function; not an essential gene; YLR413W has a paralog, FAT3, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 675 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFKILLPIC ALLTLTTFLL TIIATAGSTS NYKPITNIYI GDADISKINV TKVMPQVGPI  60
   61 LTVLGSALTA PNTTVDTIFG ALKAIASTEA LSPLLHLLSN AANTSATLSS LTQLAPMALL 120
  121 GTNTATTTTF SALDELLTTS KNTTELLDGF STLMSSMSTN TSSTSASLEN TVLTLLVDST 180
  181 NPIGTTESLI TLNNMTTEEK TKLSPVFELF ASSKNITATC DALETIMNST IPTSTVSSLF 240
  241 SSLKTSLAEG GNATETIMQL GSLVPSSLKP AVQAVVTLFD ETTSQNVTLS VLSTMIAENI 300
  301 TQSSSAKAAM GALTDLLNYT TNQTELLTSV ESLALSKEAA SSTNQLVALD EILSASANAS 360
  361 TVVSIIPTLE SQLANNTVLL KYVPYLFSLL AASSDPVSSF SSLVNITKWA ETNAATFMPM 420
  421 LKILNSAVNM TTITPEQLKE MTPSILEYLH IPVIYRLSIF TMCRAHLNRT MYSCSKSHAV 480
  481 QNMDFRSIVY NNIEGSDFKP YMDALNIGKD DLHLDGELQD RQHMYVPAVK AALAMNLMCI 540
  541 ITSFFLMVFL LLLSRRSVVS QKLWLALGFI SCWICIFSGL GSTIFSVILN MMKSGSKKDN 600
  601 YDVIISGSSP FYGLMWSGFV FAVLVFLCIA YCWWSSRKGA AIVEAEKAVQ ESDSTTSRII 660
  661 EEHESPIDAE KNFAR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) CCT3 DUN1 RAD24 RFC2 RFC3 RFC5 RPT3 SNT2 TCP1 YLR413W

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run MLP2 #27 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps3-5 Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen NUP2 YLR413W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YLR413W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] ORFEUS 8.84 Fibrinogen
    2 View Details [74..474] ORFEUS 13.46 RBP1
    3 View Details [475..675] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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