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Protein Overview: SDS23

General Information:
Name(s) found: SDS23 / YGL056C [SGD]
Description(s) found:
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  • gi|6321382|ref|NP_011459.1| One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation; Sds23p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S64060 probable membrane protein YGL056c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1723833|sp|P53172.1|SDS23_YEAST RecName: Full=Protein SDS23 [NCBI NR]
  • gi|1322554|emb|CAA96759.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Uncharacterized protein YGL056C - Saccharomyces cerevisiae (Baker's yeast) [Swiss-Prot]
  • Protein SDS23 OS=Saccharomyces cerevisiae GN=SDS23 PE=1 SV=1 [Swiss-Prot]
  • SDS23 Spindle pole body protein [mips]
  • One of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; involved in cell separation during budding [SGD]
  • SDS23, Chr VII from 396035-397618, reverse complement [yeast_orfs2]
  • Chr VII from 396035-397618, reverse complement [yeastorf3.fasta]
  • Chr VII from 396039-397622, reverse complement [yeastorf4.fasta]
  • Chr VII from 397622-396039, reverse complement [yeastorf5.fasta]
  • (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 intergenic region [4932.FASTACCERV.txt]
  • SDS23 SGDID:S0003024, Chr VII from 397622-396039, reverse complement, Verified ORF [yeastflysequest.fasta]
  • SDS23 SGDID:S0003024, Chr VII from 397624-396041, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Sds23p [Saccharomyces cerevisiae]gi|1322554|emb|CAA96759.1| unnamed protein product [Saccharomyces cerevisiae]gi|2132532|pir||S64060 probable membrane protein YGL056c - yeast (Saccharomyces cerevisiae)gi|1723833|sp|P53172|YGF6_YEAST Hypothetical 58.1 k [nrdb_11152004_Chlamydomonas]
  • SDS23 SGDID:S000003024, Chr VII from 397624-396041, reverse complement, Verified ORF, "One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • SDS23 SGDID:S000003024, Chr VII from 397624-396041, reverse complement, Verified ORF, "One of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; involved in cell separation during [yeast-200209-contam.fasta]
  • One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation; Sds23p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Uncharacterized protein YGL056C [nr-271106-contam.fasta]
  • SDS23 SGDID:S000003024, Chr VII from 397624-396041, reverse complement, Verified ORF, "One of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; involved in cell separation during budding" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed articleLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNTRHTSI VEMLSTPPQL PNSTDLNSLS EQTDKNTEAN KSDTESLHKS ISKSSSSSSL  60
   61 STLDNTEYSN NNGNSLSTLN SQNLLSVHRQ EWQHTPLSNL VEQNKLIFIR GSISVEEAFN 120
  121 TLVKHQLTSL PVENFPGDMN CLTFDYNDLN AYLLLVLNRI KVSNDKITSD CQNGKSVPVA 180
  181 EIVKLTPKNP FYKLPETENL STVIGILGSG VHRVAITNVE MTQIKGILSQ RRLIKYLWEN 240
  241 ARSFPNLKPL LDSSLEELNI GVLNAARDKP TFKQSRVISI QGDEHLIMAL HKMYVERISS 300
  301 IAVVDPQGNL IGNISVTDVK HVTRTSQYPL LHNTCRHFVS VILNLRGLET GKDSFPIFHV 360
  361 YPTSSLARTF AKLVATKSHR LWIVQPNDNQ PTASSEKSSS PSPSTPPVTT LPSLASSYHS 420
  421 NTQSSRMANS PVLKSSDTSN NKINVNINLS GPSPSQPQSP SATMPPPQSP SNCPASPTPA 480
  481 HFEKEYRTGK LIGVVSLTDI LSVLARKQTH HKEIDPQMAR KQRGHIG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SDS23 RVS161 1 Unpublished Fields Lab Data
    View Screen SDS23 MIC14 1 Unpublished Fields Lab Data
    View Screen SDS23 YIR014W 1 Unpublished Fields Lab Data
    View Screen SDS23 ACF4 1 Unpublished Fields Lab Data
    View Screen SDS23 RPS31 1 Unpublished Fields Lab Data
    View Screen SDS23 SML1 1 Unpublished Fields Lab Data
    View Screen SDS23 MRP2 1 Unpublished Fields Lab Data
    View Screen RPT4 SDS23 1 Unpublished Fields Lab Data
    View Screen SDS23 RPL4A 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SDS23 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92]
    [235..466]    		 PSI-BLAST 41.09691 Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase
    2 View Details [93..234] PSI-BLAST 41.09691 Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase
    3 View Details [467..527] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle