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Protein Overview: VAR1

General Information:
Name(s) found: VAR1 / Q0140 [SGD]
Description(s) found:
Found 22 descriptions.
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  • Mitochondrial ribosomal protein of the small subunit, mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [IDALink to PubMed article][TASLink to PubMed article]
    Biological Process: ribosomal small subunit assembly [IMPLink to PubMed article]
    translation [IDALink to PubMed article][TASLink to PubMed article]
    Molecular Function: structural constituent of ribosome [IDALink to PubMed article][TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLLNMIL SMMNKTNNNN NIIINNTLDS LMNKKLLLKN MLLDMNNKKM NNMKRMLNNN  60
   61 NMNPAGANPV VHRIGPAGNI NNKLQHLNNM NNWNTQIYNY NKNMEIMNTM NDKLINKLLY 120
  121 KMMTLKLNNM NINKIIMSKT INQHSLNKLN IKFYYYNNDI NNNNNNNNNN YYMNMMNKLM 180
  181 NIMNNNMNNN LCNILSYYYK KKVTIEPIKL SYIYLNSDIF SKYISLNDMD KYNNGILTNY 240
  241 QRMLNNIMPK LNDHNISMNY INNINNINNN KYNNMINLLN NNNNINNNNN YNNNNNNYIG 300
  301 NINNIYNNMT IDNIPMDILM YKYLVGWSIK FKGRLSNNNG RTSTTNLLNG TFNNKKYLWS 360
  361 NINNNYKLNY IPSNHNLYNN SNINKNGKYN IKVKLNFI

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details (MIPS) Mewes HW, et al. (2004) IMG1 MRP1 MRP10 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRP8 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 VAR1 YMR31
    View Details Qiu et al. (2008) COX11 EHD3 IMG1 MRP1 MRP10 MRP13 MRP17 MRP2 MRP20 MRP21 MRP4 MRP49 MRP51 MRP7 MRP8 MRPL1 MRPL10 MRPL11 MRPL16 MRPL17 MRPL19 MRPL20 MRPL22 MRPL23 MRPL24 MRPL25 MRPL27 MRPL28 MRPL3 MRPL31 MRPL32 MRPL33 MRPL35 MRPL36 MRPL37 MRPL38 MRPL39 MRPL40 MRPL49 MRPL50 MRPL51 MRPL6 MRPL7 MRPL9 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RML2 RPL10 RPL11A RPL11B RPL12B, RPL12A RPL25 RPL29 RPL3 RPL30 RPL32 RPL33A RPL40B, RPL40A RPL42B, RPL42A RPL5 RPL6A RPL6B RPL9B RPP0 RPP2B RPS0A RPS0B RPS10A RPS10B RPS11A, RPS11B RPS12 RPS14A RPS14B RPS15 RPS16B, RPS16A RPS17A RPS17B RPS19A RPS19B RPS1A RPS1B RPS2 RPS20 RPS21A RPS22A RPS22B RPS24A, RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS28A RPS29A RPS29B RPS30B, RPS30A RPS31 RPS4B, RPS4A RPS6A, RPS6B RPS7A RPS7B RPS8B, RPS8A RPS9B RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 SWS2 VAR1 YML6 YMR31

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..289] deduced N/A No confident structure predictions are available.
    2 View Details [290..398] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle