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Protein Overview: gi|30686918

General Information:
Name(s) found: gi|30686918 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|30686918|ref|NP_850847.1| CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding [Arabidop [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1072 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chromatin remodeling complex [IEA]
    Biological Process: chromatin remodeling [IEA]
    ATP-dependent chromatin remodeling [IEA]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    DNA binding [IEA]
    DNA-dependent ATPase activity [ISS]
    nucleosome binding [IEA]
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD  60
   61 EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI QQILDSQNAS IDADMNNKGK 120
  121 GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG 180
  181 TRLLTQPACI QGKLRDYQLA GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR 240
  241 GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS 300
  301 FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE 360
  361 LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK VLRPFLLRRL KSDVEKGLPP 420
  421 KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP 480
  481 GPPYTTGDHL VTNAGKMVLL DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR 540
  541 IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ 600
  601 AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL 660
  661 LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA KMKKFTEDAI QFKMDDSADF 720
  721 YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR 780
  781 MPQLHDFQFF NIQRLTELYE KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE 840
  841 LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN 900
  901 DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM 960
  961 ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA RRCDTLIRLI EKENQEFDER1020
 1021 ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] deduced N/A No confident structure predictions are available.
    2 View Details [161..744] PSI-BLAST 76.09691 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    3 View Details [745..1072] PSI-BLAST 54.69897 nucleosome recognition module of ISWI ATPase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  3.1726526166851 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.51683451033161 bayes_pls_golite062009
  • DNA binding
    		•  2.12258000781149 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.23094623498843 bayes_pls_golite062009
  • protein binding
    		•  1.22129154759482 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  1.21658213854831 bayes_pls_golite062009
  • ribonucleotide binding
    		•  1.21652144153182 bayes_pls_golite062009
  • purine nucleotide binding
    		•  1.21571071905795 bayes_pls_golite062009
  • nucleotide binding
    		•  1.20347573865566 bayes_pls_golite062009
  • motor activity
    		•  1.14667913749579 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription activator activity
    		•  0.889929694023098 bayes_pls_golite062009
  • transcription factor activity
    		•  0.887108427603557 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  0.729056749897011 bayes_pls_golite062009
  • steroid hormone receptor binding
    		•  0.647625526012423 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.620212706423176 bayes_pls_golite062009
  • helicase activity
    		•  0.6191010101321 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.60036517876321 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.57378485697982 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.543891899378373 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.500462538667228 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.49811753387851 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.49000746592281 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.388587892299301 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.372638007722845 bayes_pls_golite062009
  • GTP binding
    		•  0.364508542344128 bayes_pls_golite062009
  • hormone receptor binding
    		•  0.351501100511918 bayes_pls_golite062009
  • centromeric DNA binding
    		•  0.322818640526369 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.24825301806267 bayes_pls_golite062009
  • nuclear hormone receptor binding
    		•  0.246160342138071 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.243902356228423 bayes_pls_golite062009
  • GTPase activity
    		•  0.234351968078991 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18426050934025 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147579541298736 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.14606996093053 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.133017653323467 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.13050483816765 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.111293884322157 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.089234257580272 bayes_pls_golite062009
  • actin binding
    		•  0.00482938540552702 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle