| Protein: | gi|30686918 |
| Organism: | Arabidopsis thaliana |
| Length: | 1072 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30686918.
| Description | E-value | Query Range |
Subject Range |
|
|
748.0 | [0..1] | [1069..1] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD 60
61 EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI QQILDSQNAS IDADMNNKGK 120
121 GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-744] |
1 11 21 31 41 51
| | | | | |
1 EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA GLNWLIRLYE NGINGILADE 60
61 MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE 120
121 RRHIREELLV AGKFDICVTS FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL 180
181 FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK 240
241 VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN 300
301 IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL DKLLPKLKDR DSRVLIFSQM 360
361 TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL 420
421 ATADVVILYD SDWNPQVDLQ AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD 480
481 ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA 540
541 KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWN
|
| Detection Method: | |
| Confidence: | 76.09691 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 3.1726526166851 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.23094623498843 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 0.729056749897011 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.647625526012423 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.620212706423176 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| DNA helicase activity | 0.57378485697982 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| DNA clamp loader activity | 0.49811753387851 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.49000746592281 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.388587892299301 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.372638007722845 | bayes_pls_golite062009 |
| GTP binding | 0.364508542344128 | bayes_pls_golite062009 |
| hormone receptor binding | 0.351501100511918 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.322818640526369 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.24825301806267 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 0.246160342138071 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| GTPase activity | 0.234351968078991 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.133017653323467 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [745-1072] |
1 11 21 31 41 51
| | | | | |
1 DPPKRERKRN YSEVEYFKQT LRQGAPAKPK EPRIPRMPQL HDFQFFNIQR LTELYEKEVR 60
61 YLMQAHQKTQ MKDTIEVDEP EEVGDPLTAE EVEEKELLLE EGFSTWSRRD FNAFIRACEK 120
121 YGRNDIKSIA SEMEGKTEEE VERYAQVFQV RYKELNDYDR IIKNIERGEA RISRKDEIMK 180
181 AIGKKLDRYR NPWLELKIQY GQNKGKLYNE ECDRFMICMV HKLGYGNWDE LKAAFRTSPL 240
241 FRFDWFVKSR TTQELARRCD TLIRLIEKEN QEFDERERQA RKEKKLSKSA TPSKRPSGRQ 300
301 ANESPSSLLK KRKQLSMDDY VSSGKRRK
|
| Detection Method: | |
| Confidence: | 54.69897 |
| Match: | 1ofcX |
| Description: | nucleosome recognition module of ISWI ATPase |
Matching Structure (courtesy of the PDB): |
|
