| Protein: | fft3 (reserved) |
| Organism: | Schizosaccharomyces pombe |
| Length: | 922 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fft3 (reserved).
| Description | E-value | Query Range |
Subject Range |
|
|
408.0 | [0..83] | [922..423] |
|
|
401.0 | [0..117] | [918..268] |
|
|
400.0 | [0..7] | [922..371] |
|
|
396.0 | [0..83] | [922..436] |
|
|
395.0 | [0..83] | [922..408] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MDGKRKIEHT ADGTHYDATS NVKRKPIFPP FIADSLSEAT EKANVMGGGM NSRLQILSEM 60
61 SKRVQATAPI SSLEHFKQLS DISPSFTSSA NSINQPYNYS GSLENLVPTP SAGTPSQFMD 120
121 AQNPYGAVYN ALSQFSETEP KMPSYMDDEE ASDSLPLSLS SQSLSSQVTN QKPAPH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [177-347] |
1 11 21 31 41 51
| | | | | |
1 RLTMRERYAA NNLTNGLQFT LPLSSRKTYE PEADDDSNDD MYSDDDSNAD RWASRIDTAA 60
61 LKEEVLKYMN RCSTQDLADM TGCTLAEAEF MVAKRPFPDL ESALVVKQPR PVIPKGRRGR 120
121 REKTPLGPRL VGICMEIMRG YFVVDALIRQ CEQLGGKIQR GIEAWGLSNT A
|
| Detection Method: | |
| Confidence: | 1.68 |
| Match: | 1s5lU |
| Description: | Architecture of the photosynthetic oxygen evolving center |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-922] |
1 11 21 31 41 51
| | | | | |
1 TSDEGETSLV NFDQMKSFGT PANSSFITTP PASFSPDIKL QDYQIIGINW LYLLYELKLA 60
61 GILADEMGLG KTCQTIAFFS LLMDKNINGP HLVIAPASTM ENWLREFAKF CPKLKIELYY 120
121 GSQVEREEIR ERINSNKDSY NVMLTTYRLA ATSKADRLFL RNQKFNVCVY DEGHYLKNRA 180
181 SERYRHLMSI PADFRVLLTG TPLQNNLKEL ISLLAFILPH VFDYGLKSLD VIFTMKKSPE 240
241 SDFERALLSE QRVSRAKMMM APFVLRRKKS QVLDALPKKT RIIEFCEFSE EERRRYDDFA 300
301 SKQSVNSLLD ENVMKTNLDT NANLAKKKST AGFVLVQLRK LADHPMLFRI HYKDDILRQM 360
361 AKAIMNEPQY KKANELYIFE DMQYMSDIEL HNLCCKFPSI NSFQLKDEPW MDATKVRKLK 420
421 KLLTNAVENG DRVVLFSQFT QVLDILQLVM KSLNLKFLRF DGSTQVDFRQ DLIDQFYADE 480
481 SINVFLLSTK AGGFGINLAC ANMVILYDVS FNPFDDLQAE DRAHRVGQKK EVTVYKFVVK 540
541 DTIEEHIQRL ANAKIALDAT LSGNAETVEA EDDDD
|
| Detection Method: | |
| Confidence: | 77.09691 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.69246499202248 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.61582393123755 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.59641929642359 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.59333672868803 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| transporter activity | 2.17383908004663 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| ATPase activity | 2.11122403732968 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.02444700826552 | bayes_pls_golite062009 |
| ATPase activity, coupled | 1.8908019270286 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| microtubule motor activity | 1.6537049553461 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 1.62578154021163 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 1.61568379110546 | bayes_pls_golite062009 |
| GTP binding | 1.60042477805119 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.47858140861683 | bayes_pls_golite062009 |
| hydrolase activity | 1.35268825531078 | bayes_pls_golite062009 |
| motor activity | 1.34881124154297 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.97700154207756 | bayes_pls_golite062009 |
| GTPase activity | 0.897989893461858 | bayes_pls_golite062009 |
| structural molecule activity | 0.86514677273731 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
| nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.608058786636536 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.539479261019683 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| translation regulator activity | 0.493216082928152 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.480200274620277 | bayes_pls_golite062009 |
| RNA helicase activity | 0.34746349346164 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.30832907234141 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.29532978396745 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
| microfilament motor activity | 0.10236059675512 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.081265446432119 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| protein transporter activity | 0.0397092337273124 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
