Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR017C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..551] | [1..551] |
|
|
0.0 | [45..544] | [7..487] |
|
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0.0 | [85..545] | [1..456] |
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0.0 | [83..545] | [4..462] |
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0.0 | [47..549] | [1..495] |
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0.0 | [44..541] | [1..493] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MSSGTENDQF YSFDESDSSS IELYESHNTS EFTIHGLVFP KLISVTSQDS EFDINEDEDG 60
61 VDTIYEGMLD APLTKNNKRI LCEGSVPNLS YECLTTKGIF ERMLQRVDHL QPIFAIPSAD 120
121 ILILLQHYDW NEERLLEVWT EKMDELLVEL GLST
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [155-293] |
1 11 21 31 41 51
| | | | | |
1 TANIKKDNDY NSHFREVEFK NDFTCIICCD KKDTETFALE CGHEYCINCY RHYIKDKLHE 60
61 GNIITCMDCS LALKNEDIDK VMGHPSSSKL MDSSIKSFVQ KHNRNYKWCP FADCKSIVHL 120
121 RDTSSLPEYT RLHYSPFVK
|
| Detection Method: | |
| Confidence: | 2.045757 |
| Match: | 1rmd__ |
| Description: | V(D)J recombination activating protein 1 (RAG1), dimerization domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [294-386] |
1 11 21 31 41 51
| | | | | |
1 CNSFHRFCFN CGFEVHSPAD CKITTAWVKK ARKESEILNW VLSHTKECPK CSVNIEKNGG 60
61 CNHMVCSSCK YEFCWICEGP WAPHGKNFFQ CTM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.487 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.384 | a.46.1 | Methionine synthase domain |
| View | Download | 0.353 | d.26.3 | Chitinase insertion domain |
| View | Download | 0.341 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.332 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.302 | a.77.1 | DEATH domain |
| View | Download | 0.299 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.262 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.258 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.247 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.231 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
|
Region A: Residues: [387-551] |
1 11 21 31 41 51
| | | | | |
1 YKNNEDNKSK NPQDANKTLK KYTFYYRLFN EHEVSAKLDW NLGQTLGTKV HALQERIGIS 60
61 WIDGQFLSES LKVLNEGRTV LKWSFAVAYY SDASHNLTKI FVDNQMLLAN AVESLSELLQ 120
121 IKTPEVIMKR RPEFYNKAGY VENRTTALME CGRELLCKGI CKAAE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 5.65442784325159 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.55686022186257 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.59153177011595 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.07217714843839 | bayes_pls_golite062009 |
| binding | 2.19426901055464 | bayes_pls_golite062009 |
| protein binding | 1.62051249360163 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| nucleic acid binding | 0.708499177773075 | bayes_pls_golite062009 |
| ligase activity | 0.63517530468004 | bayes_pls_golite062009 |
| transcription regulator activity | 0.553991532499653 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| DNA binding | 0.227671243150662 | bayes_pls_golite062009 |
| hydrolase activity | 0.156835837705934 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| peptidase activity | 0.121357659741468 | bayes_pls_golite062009 |
|
Region A: Residues: [392-551] |
1 11 21 31 41 51
| | | | | |
1 DNKSKNPQDA NKTLKKYTFY YRLFNEHEVS AKLDWNLGQT LGTKVHALQE RIGISWIDGQ 60
61 FLSESLKVLN EGRTVLKWSF AVAYYSDASH NLTKIFVDNQ MLLANAVESL SELLQIKTPE 120
121 VIMKRRPEFY NKAGYVENRT TALMECGREL LCKGICKAAE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
