| Protein: | OTU1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 301 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OTU1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-98 | [1..301] | [1..301] |
|
|
4.0E-80 | [1..299] | [4..328] |
|
|
4.0E-72 | [5..299] | [1..346] |
|
|
4.0E-55 | [106..299] | [2..206] |
|
|
1.0E-43 | [66..239] | [167..345] |
|
|
1.0E-42 | [52..239] | [5..206] |
|
|
7.0E-42 | [52..239] | [144..350] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MKLKVTGAGI NQVVTLKQDA TLNDLIEHIN VDVKTMRFGY PPQRINLQGE DASLGQTQLD 60
61 ELGINSGEKI TIESSDSNES FSLPPPQPKP KRVL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.500 | d.15.1 | Ubiquitin-like |
| View | Download | 0.615 | b.52.2 | ADC-like |
| View | Download | 0.540 | d.94.1 | HPr-like |
| View | Download | 0.642 | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.477 | b.44.1 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| View | Download | 0.474 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.440 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.430 | d.15.1 | Ubiquitin-like |
| View | Download | 0.427 | b.1.2 | Fibronectin type III |
| View | Download | 0.419 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.418 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.409 | b.1.20 | Tp47 lipoprotein, middle and C-terminal domains |
| View | Download | 0.406 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.394 | b.1.2 | Fibronectin type III |
| View | Download | 0.392 | d.94.1 | HPr-like |
| View | Download | 0.374 | b.7.3 | PHL pollen allergen |
| View | Download | 0.374 | b.1.18 | E set domains |
| View | Download | 0.369 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.369 | b.13.3 | Description not found. |
| View | Download | 0.367 | d.15.1 | Ubiquitin-like |
| View | Download | 0.360 | d.15.1 | Ubiquitin-like |
| View | Download | 0.346 | c.15.1 | BRCT domain |
| View | Download | 0.345 | c.47.1 | Thioredoxin-like |
| View | Download | 0.340 | b.1.1 | Immunoglobulin |
| View | Download | 0.338 | b.1.18 | E set domains |
| View | Download | 0.331 | d.94.1 | HPr-like |
| View | Download | 0.327 | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.314 | a.74.1 | Cyclin-like |
| View | Download | 0.314 | c.47.1 | Thioredoxin-like |
| View | Download | 0.311 | b.52.2 | ADC-like |
| View | Download | 0.311 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.305 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.303 | d.15.1 | Ubiquitin-like |
| View | Download | 0.275 | b.11.1 | gamma-Crystallin-like |
| View | Download | 0.257 | b.1.1 | Immunoglobulin |
| View | Download | 0.256 | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.256 | b.44.1 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| View | Download | 0.248 | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.245 | d.15.1 | Ubiquitin-like |
| View | Download | 0.243 | g.7.1 | Snake toxin-like |
| View | Download | 0.243 | b.52.2 | ADC-like |
| View | Download | 0.242 | d.131.1 | DNA clamp |
| View | Download | 0.233 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.232 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.223 | b.7.4 | Rab geranylgeranyltransferase alpha-subunit, insert domain |
| View | Download | 0.216 | d.68.3 | SirA-like |
| View | Download | 0.213 | d.76.1 | GYF domain |
| View | Download | 0.203 | c.53.1 | Resolvase-like |
| View | Download | 0.200 | d.15.6 | Superantigen toxins, C-terminal domain |
| Term | Confidence | Notes |
| cysteine-type peptidase activity | 6.54685807643041 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 6.39247995905454 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 5.91394445088241 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 4.1832081096766 | bayes_pls_golite062009 |
| peptidase activity | 3.28868056127375 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.01472402774099 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 2.96735553959103 | bayes_pls_golite062009 |
| SUMO-specific protease activity | 2.65263825059319 | bayes_pls_golite062009 |
| hydrolase activity | 2.29464693834116 | bayes_pls_golite062009 |
| endopeptidase activity | 2.26699762664334 | bayes_pls_golite062009 |
| transcription regulator activity | 2.13534310479552 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| DNA binding | 1.95013248594294 | bayes_pls_golite062009 |
| binding | 1.92046698500094 | bayes_pls_golite062009 |
| nucleic acid binding | 1.74961503597682 | bayes_pls_golite062009 |
| transcription factor activity | 1.20242512567523 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.874003454509364 | bayes_pls_golite062009 |
| NEDD8-specific protease activity | 0.687958315289315 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| transferase activity | 0.0852393573521809 | bayes_pls_golite062009 |
|
Region A: Residues: [95-232] |
1 11 21 31 41 51
| | | | | |
1 KSTEMSIGGS GENVLSVHPV LDDNSCLFHA IAYGIFKQDS VRDLREMVSK EVLNNPVKFN 60
61 DAILDKPNKD YAQWILKMES WGGAIEIGII SDALAVAIYV VDIDAVKIEK FNEDKFDNYI 120
121 LILFNGIHYD SLTMNEFK
|
| Detection Method: | |
| Confidence: | 38.79588 |
| Match: | PF02338 |
| Description: | OTU-like cysteine protease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| DNA binding | 4.31051339571017 | bayes_pls_golite062009 |
| nucleic acid binding | 4.04689255235626 | bayes_pls_golite062009 |
| transcription factor activity | 3.28758716579796 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.05542379535543 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| transcription repressor activity | 1.44763794968807 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.26862497534835 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| chromatin binding | 1.10179307236186 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.776754909146767 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [233-301] |
1 11 21 31 41 51
| | | | | |
1 TVFNKNQPES DDVLTAALQL ASNLKQTGYS FNTHKAQIKC NTCQMTFVGE REVARHAEST 60
61 GHVDFGQNR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.422 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.478 | d.58.17 | Metal-binding domain |
| View | Download | 0.449 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.462 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.476 | d.58.17 | Metal-binding domain |
| View | Download | 0.420 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.416 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.411 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.396 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.380 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.362 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.354 | c.47.1 | Thioredoxin-like |
| View | Download | 0.346 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.336 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.335 | d.58.17 | Metal-binding domain |
| View | Download | 0.330 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.317 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.312 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.309 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.301 | a.4.1 | Homeodomain-like |
| View | Download | 0.300 | a.4.1 | Homeodomain-like |
| View | Download | 0.296 | d.59.1 | Ribosomal protein L30p/L7e |
| View | Download | 0.295 | g.28.1 | Thyroglobulin type-1 domain |
| View | Download | 0.295 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.290 | g.28.1 | Thyroglobulin type-1 domain |
| View | Download | 0.289 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.288 | d.93.1 | SH2 domain |
| View | Download | 0.287 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.286 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.282 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.271 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.264 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.264 | c.47.1 | Thioredoxin-like |
| View | Download | 0.262 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.261 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.261 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.261 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.260 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.260 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.257 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.254 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.253 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.249 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.247 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.245 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.243 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.242 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.242 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.240 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.233 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.231 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.230 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.228 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.220 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.217 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.214 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.210 | d.58.48 | MTH1187-like |
| View | Download | 0.207 | c.47.1 | Thioredoxin-like |
| View | Download | 0.207 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.201 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.200 | a.144.2 | Ribosomal protein L20 |
