| Protein: | RAD3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 778 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..763] | [1..763] |
|
|
0.0 | [1..773] | [1..771] |
|
|
0.0 | [1..773] | [1..771] |
|
|
0.0 | [1..773] | [1..771] |
|
|
0.0 | [1..748] | [1..745] |
|
|
0.0 | [1..732] | [1..732] |
|
|
0.0 | [1..732] | [1..732] |
|
Region A: Residues: [1-221] |
1 11 21 31 41 51
| | | | | |
1 MKFYIDDLPV LFPYPKIYPE QYNYMCDIKK TLDVGGNSIL EMPSGTGKTV SLLSLTIAYQ 60
61 MHYPEHRKII YCSRTMSEIE KALVELENLM DYRTKELGYQ EDFRGLGLTS RKNLCLHPEV 120
121 SKERKGTVVD EKCRRMTNGQ AKRKLEEDPE ANVELCEYHE NLYNIEVEDY LPKGVFSFEK 180
181 LLKYCEEKTL CPYFIVRRMI SLCNIIIYSY HYLLDPKIAE R
|
| Detection Method: |  |
| Confidence: | 39.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.47805400577115 | bayes_pls_golite062009 |
| dATP binding | 3.90236137621968 | bayes_pls_golite062009 |
| adenyl deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| purine deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.72222787956584 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.60873257753475 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| endonuclease activity | 1.96689197136388 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| microtubule motor activity | 1.6537049553461 | bayes_pls_golite062009 |
| RNA helicase activity | 1.63960194106079 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.61735400124552 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.60404584546501 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.11383295816593 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.595694294246159 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.394186699348086 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.360529478474946 | bayes_pls_golite062009 |
| nucleotide binding | 0.354857598792381 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.35235724478784 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.352298062690593 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.181509771587324 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [222-389] |
1 11 21 31 41 51
| | | | | |
1 VSNEVSKDSI VIFDEAHNID NVCIESLSLD LTTDALRRAT RGANALDERI SEVRKVDSQK 60
61 LQDEYEKLVQ GLHSADILTD QEEPFVETPV LPQDLLTEAI PGNIRRAEHF VSFLKRLIEY 120
121 LKTRMKVLHV ISETPKSFLQ HLKQLTFIER KPLRFCSERL SLLVRTLE
|
| Detection Method: | |
| Confidence: | 39.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [390-441] |
1 11 21 31 41 51
| | | | | |
1 VTEVEDFTAL KDIATFATLI STYEEGFLLI IEPYEIENAA VPNPIMRFTC LD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [442-725] |
1 11 21 31 41 51
| | | | | |
1 ASIAIKPVFE RFSSVIITSG TISPLDMYPR MLNFKTVLQK SYAMTLAKKS FLPMIITKGS 60
61 DQVAISSRFE IRNDPSIVRN YGSMLVEFAK ITPDGMVVFF PSYLYMESIV SMWQTMGILD 120
121 EVWKHKLILV ETPDAQETSL ALETYRKACS NGRGAILLSV ARGKVSEGID FDHQYGRTVL 180
181 MIGIPFQYTE SRILKARLEF MRENYRIREN DFLSFDAMRH AAQCLGRVLR GKDDYGVMVL 240
241 ADRRFSRKRS QLPKWIAQGL SDADLNLSTD MAISNTKQFL RTMA
|
| Detection Method: | |
| Confidence: | 9.08 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [726-778] |
1 11 21 31 41 51
| | | | | |
1 QPTDPKDQEG VSVWSYEDLI KHQNSRKDQG GFIENENKEG EQDEDEDEDI EMQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
