| Protein: | SWR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1514 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1514] | [1..1514] |
|
|
0.0 | [219..1509] | [4..1280] |
|
|
0.0 | [211..1496] | [3..1331] |
|
|
0.0 | [268..1436] | [102..1296] |
|
|
0.0 | [68..1180] | [1497..2524] |
|
|
0.0 | [179..1156] | [271..1196] |
|
|
0.0 | [480..1404] | [57..883] |
|
Region A: Residues: [1-346] |
1 11 21 31 41 51
| | | | | |
1 MTTSRKSHAK DKKAGGEQDL ADLKFRYDLL TNELFHLREF VSLVDYDPTH FNDSESFQKF 60
61 LRETHLSLEE RGEKFTDDVA KKGTNGDLTR RRRNLRTSTV VSSETTNEKK GDIELKLESI 120
121 APLVRNKCEE LKYKLSDHSN RKSIVPQKRP IQHLKKREAA KSLKFKSERK ENPLPLHEHI 180
181 AEERYDHIAK VEEPSEAFTI KCPSDDSSFE NTSEHYSDNF YFTTSSEEED IKKKRGRKKK 240
241 KPRIKLVVHP PKQTITNPLH VVKPGYESLH EYIASFKSLE DDLTLEEYNK YIDEQRRLLS 300
301 RLKKGIENGA LKYDKETDSL QPITSKEIKT IITYKPDPIS YFYKQQ
|
| Detection Method: |  |
| Confidence: | 3.154902 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [347-632] |
1 11 21 31 41 51
| | | | | |
1 DLQIHTDHLI NQGIHMSKLF RSSTKARIAR AKKVSQMIEQ HFKHVAGAEE RKAKEEERHK 60
61 KSLARFAVQA VKKRWNMAEK AYRILRKDEE EQLKRIEGKQ HLSKMLEKST QLLEAQLNQV 120
121 NDDGRSSTPS SDSNDVLSES DDDMDDELST SSDEDEEVDA DVGLENSPAS TEATPTDESL 180
181 NLIQLKEKYG HFNGSSTVYD SRNKDEKFPT LDKHESSSSE SSVMTGEESS IYSSSENESQ 240
241 NENDRESDDK TPSVGLSALF GKGEESDGDL DLDDSEDFTV NSSSVE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [633-1005] |
1 11 21 31 41 51
| | | | | |
1 GEELEKDQVD NSAATFERAG DFVHTQNENR DDIKDVEEDA ETKVQEEQLS VVDVPVPSLL 60
61 RGNLRTYQKQ GLNWLASLYN NHTNGILADE MGLGKTIQTI SLLAYLACEK ENWGPHLIVV 120
121 PTSVLLNWEM EFKRFAPGFK VLTYYGSPQQ RKEKRKGWNK PDAFHVCIVS YQLVVQDQHS 180
181 FKRKRWQYMV LDEAHNIKNF RSTRWQALLN FNTQRRLLLT GTPLQNNLAE LWSLLYFLMP 240
241 QTVIDGKKVS GFADLDAFQQ WFGRPVDKII ETGQNFGQDK ETKKTVAKLH QVLRPYLLRR 300
301 LKADVEKQMP AKYEHIVYCK LSKRQRFLYD DFMSRAQTKA TLASGNFMSI VNCLMQLRKV 360
361 CNHPNLFEVR PIL
|
| Detection Method: | |
| Confidence: | 114.004365 |
| Match: | PF00176 |
| Description: | SNF2 family N-terminal domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.68677407235528 | bayes_pls_golite062009 |
| nucleic acid binding | 2.55499128961037 | bayes_pls_golite062009 |
| telomeric DNA binding | 2.51555240517937 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 2.42617682290608 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.05166830102408 | bayes_pls_golite062009 |
| structural molecule activity | 1.88289765635623 | bayes_pls_golite062009 |
| DNA binding | 1.82124247082886 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.44779598506198 | bayes_pls_golite062009 |
| ribonuclease activity | 1.29444332911502 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.28974640221593 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.498105565279986 | bayes_pls_golite062009 |
| translation regulator activity | 0.433181719163502 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.385829426544547 | bayes_pls_golite062009 |
| protein binding | 0.360033745054291 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.249698955842391 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.227933240776321 | bayes_pls_golite062009 |
| chromatin binding | 0.1876135725713 | bayes_pls_golite062009 |
| nuclease activity | 0.1667307589287 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.12942560136182 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 0.111973370145519 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.0926650185896696 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.0926650185896696 | bayes_pls_golite062009 |
|
Region A: Residues: [1006-1237] |
1 11 21 31 41 51
| | | | | |
1 TSFVLEHCVA SDYKDVERTL LKLFKKNNQV NRVDLDFLNL VFTLNDKDLT SYHAEEISKL 60
61 TCVKNFVEEV NKLRETNKQL QEEFGEASFL NFQDANQYFK YSNKQKLEGT VDMLNFLKMV 120
121 NKLRCDRRPI FGKNLIDLLT KDRRVKYDKS SIIDNELIKP LQTRVLDNRK IIDTFAVLTP 180
181 SAVSLDMRKL ALGLNDDSSV GENTRLKVMQ NCFEVSNPLH QLQTKLTIAF PD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| DNA-dependent ATPase activity | 2.58390156971125 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| binding | 2.4974940028864 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.85030653553169 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.84811666933472 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.0904709750093 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| nucleic acid binding | 0.775560967092349 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.540750418412449 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.517457589081898 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.428373955572763 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.424644011903671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.424583288440993 | bayes_pls_golite062009 |
| nucleotide binding | 0.422354428195324 | bayes_pls_golite062009 |
| protein binding | 0.378225828131122 | bayes_pls_golite062009 |
| DNA helicase activity | 0.3665939534705 | bayes_pls_golite062009 |
| helicase activity | 0.243380876721902 | bayes_pls_golite062009 |
| DNA binding | 0.226110787229935 | bayes_pls_golite062009 |
| ATP binding | 0.04834397972685 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0315266818880198 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.0149501427627318 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0102645529518819 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.00365326483311895 | bayes_pls_golite062009 |
|
Region A: Residues: [1238-1360] |
1 11 21 31 41 51
| | | | | |
1 KSLLQYDCGK LQKLAILLQQ LKDNGHRALI FTQMTKVLDV LEQFLNYHGY LYMRLDGATK 60
61 IEDRQILTER FNTDSRITVF ILSSRSGGLG INLTGADTVI FYDSDWNPAM DKQCQDRCHR 120
121 IGQ
|
| Detection Method: | |
| Confidence: | 22.031517 |
| Match: | PF00271 |
| Description: | Helicase conserved C-terminal domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1361-1514] |
1 11 21 31 41 51
| | | | | |
1 TRDVHIYRFV SEHTIESNIL KKANQKRQLD NVVIQEGDFT TDYFSKLSVR DLLGSELPEN 60
61 ASGGDKPLIA DADVAAKDPR QLERLLAQAE DEDDVKAANL AMREVEIDND DFDESTEKKA 120
121 ANEEEENHAE LDEYEGTAHV DEYMIRFIAN GYYY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
