YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|74311733, gi\|...
Organism:	Shigella sonnei Ss046
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|74311733, gi|....

Description	E-value	Query Range	Subject Range
gi\|238717579, gi... - gi\|77961132\|ref\|ZP_00824978.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	257.0	[0..1]	[266..7]
gi\|16122097, gi\|... - gi\|218928965\|ref\|YP_002346840.1\| cystine transporter subunit [Yersinia pestis CO92], gi\|16122097\|ref... gi\|166010832, gi... - gi\|166010832\|ref\|ZP_02231730.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|165925949, gi... - gi\|165925949\|ref\|ZP_02221781.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ori... gi\|167401164, gi... - gi\|167401164\|ref\|ZP_02306667.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|166207832, gi... - gi\|166210652\|ref\|ZP_02236687.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|167055180, gi... - gi\|167425781\|ref\|ZP_02317534.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Med... gi\|166961845, gi... - gi\|167420150\|ref\|ZP_02311903.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ori... gi\|149292621, gi... - gi\|149366208\|ref\|ZP_01888243.1\| putative cystine-binding periplasmic protein [Yersinia pestis CA88-4... gi\|229701217, gi... - gi\|229896294\|ref\|ZP_04511464.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|165913394, gi... - gi\|89105430\|ref\|ZP_01177949.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|229693568, gi... - gi\|229897231\|ref\|ZP_04512387.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|162353595, gi... - gi\|77635978\|ref\|ZP_00798056.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|108779131, gi... - gi\|108807218\|ref\|YP_651134.1\| cystine transporter subunit [Yersinia pestis Antiqua], gi\|108779131\|gb... gi\|229897958, gi... - gi\|229897958\|ref\|ZP_04513109.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|117673858, gi... - gi\|77628915\|ref\|ZP_00791501.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|229680258, gi... - gi\|229902811\|ref\|ZP_04517928.1\| cystine transporter subunit; periplasmic-binding component of ABC su... Q66BQ3\|Q66BQ3_YERPS - Putative cystine-binding periplasmic protein precursor - Yersinia pseudotuberculosis gi\|186895159, gi... - gi\|186895159\|ref\|YP_001872271.1\| cystine transporter subunit [Yersinia pseudotuberculosis PB1/+], gi... gi\|170024601, gi... - gi\|170024601\|ref\|YP_001721106.1\| cystine transporter subunit [Yersinia pseudotuberculosis YPIII], gi... gi\|22126343, gi\|... - gi\|22126343\|ref\|NP_669766.1\| cystine transporter subunit [Yersinia pestis KIM], gi\|21959325\|gb\|AAM86... gi\|25296340 - pir\|\|AC0225 probable cystine-binding periplasmic protein fliY [imported] - Yersinia pestis (strain C... gi\|51596053, gi\|... - gi\|51596053\|ref\|YP_070244.1\| cystine transporter subunit [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|45441366, gi\|... - gi\|45441366\|ref\|NP_992905.1\| cystine transporter subunit [Yersinia pestis biovar Microtus str. 91001...	256.0	[0..1]	[266..1]
gi\|77979904 - gi\|77979904\|ref\|ZP_00835320.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	255.0	[0..1]	[266..7]
gi\|77975692 - gi\|77975692\|ref\|ZP_00831226.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	255.0	[0..1]	[266..1]
gi\|77957941 - gi\|77957941\|ref\|ZP_00821984.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	255.0	[0..1]	[266..1]
gi\|82776400, gi\|... - gi\|82776400\|ref\|YP_402749.1\| cystine transporter subunit [Shigella dysenteriae Sd197], gi\|81240548\|g...	253.0	[0..1]	[266..1]
gi\|253773127, gi... - gi\|253773127\|ref\|YP_003035958.1\| extracellular solute-binding protein family 3 [Escherichia coli BL2... gi\|117624062, gi... - gi\|117624062\|ref\|YP_852975.1\| cystine transporter subunit [Escherichia coli APEC O1], gi\|115513186\|g... gi\|237705876, gi... - gi\|237705876\|ref\|ZP_04536357.1\| cystine-binding periplasmic protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|26108591, gi\|... - gi\|26248187\|ref\|NP_754227.1\| cystine transporter subunit [Escherichia coli CFT073], gi\|26108591\|gb\|A... gi\|91072713, gi\|... - gi\|91211139\|ref\|YP_541125.1\| cystine transporter subunit [Escherichia coli UTI89], gi\|91072713\|gb\|AB... tr\|A0A0G3HGM5\|A0... - Cystine transporter subunit protein OS=Escherichia coli (strain K12) GN=fliY PE=3 SV=1	252.0	[0..1]	[266..20]
gi\|24052304, gi\|... - gi\|24113297\|ref\|NP_707807.1\| cystine transporter subunit [Shigella flexneri 2a str. 301], gi\|2405230...	251.0	[0..1]	[266..20]
gi\|75228520, gi\|... - gi\|75228520\|ref\|ZP_00715157.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|193071146, gi... - gi\|75233954\|ref\|ZP_00718407.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|75175222, gi\|... - gi\|75175222\|ref\|ZP_00695538.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|124498563, gi... - gi\|124531448\|ref\|ZP_01701732.1\| extracellular solute-binding protein, family 3 [Escherichia coli B],... gi\|75208832, gi\|... - gi\|75208832\|ref\|ZP_00709116.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|81245023, gi\|... - gi\|82543612\|ref\|YP_407559.1\| cystine transporter subunit [Shigella boydii Sb227], gi\|81245023\|gb\|ABB... gi\|75255519, gi\|... - gi\|75255519\|ref\|ZP_00727311.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|188486898, gi... - gi\|75511458\|ref\|ZP_00734133.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|110615441, gi... - gi\|110805893\|ref\|YP_689413.1\| cystine transporter subunit [Shigella flexneri 5 str. 8401], gi\|110615... gi\|218554504, gi... - gi\|218554504\|ref\|YP_002387417.1\| cystine transporter subunit [Escherichia coli IAI1], gi\|218361272\|e... gi\|194439567, gi... - gi\|83585042\|ref\|ZP_00923696.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|218432512, gi... - gi\|218705415\|ref\|YP_002412934.1\| cystine transporter subunit [Escherichia coli UMN026], gi\|218432512...	250.0	[0..1]	[266..1]
gi\|15831913, gi\|... - gi\|15831913\|ref\|NP_310686.1\| cystine transporter subunit [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|209767000, gi... - pir\|\|C85809 probable periplasmic binding transport protein fliY [imported] - Escherichia coli (strai... gi\|12516018, gi\|... - gi\|15802355\|ref\|NP_288381.1\| cystine transporter subunit [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|15831913, gi\|... - gi\|15831913\|ref\|NP_310686.1\| putative periplasmic binding transport protein [Escherichia coli O157:H... gi\|217329017, gi... - gi\|217329017\|ref\|ZP_03445098.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. T... gi\|208731412, gi... - gi\|208817069\|ref\|ZP_03258189.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. E... gi\|208810217, gi... - gi\|208810217\|ref\|ZP_03252093.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. E... gi\|209158148, gi... - gi\|209396748\|ref\|YP_002271034.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. ... gi\|208741542, gi... - gi\|208821419\|ref\|ZP_03261739.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. E... gi\|168802264, gi... - gi\|189375717\|gb\|EDU94133.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. EC508... gi\|168783314, gi... - gi\|188999320\|gb\|EDU68306.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. EC407... gi\|195939224 - gi\|195939224\|ref\|ZP_03084606.1\| cystine transporter subunit [Escherichia coli O157:H7 str. EC4024] gi\|254793570, gi... - gi\|254793570\|ref\|YP_003078407.1\| cystine transporter subunit; periplasmic-binding component of ABC s... gi\|189370199, gi... - gi\|189405428\|ref\|ZP_02815331.2\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. E... gi\|188014185, gi... - gi\|188014185\|gb\|EDU52307.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. EC411... gi\|189359726, gi... - gi\|189359726\|gb\|EDU78145.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. EC448... gi\|168758231, gi... - gi\|189354911\|gb\|EDU73330.1\| cystine-binding periplasmic protein [Escherichia coli O157:H7 str. EC440...	250.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAHLGRQA LMGVMAVALV AGMSVKSFAD EGLLNKVKER GTLLVGLEGT YPPFSFQGDD  60
   61 GKLTGFEVEF AQQLAKHLGV EASLKPTKWD GMLASLDSKR IDVVINQVTI SDERKKKYDF 120
  121 STPYTISGIQ ALVKKGNEGT IKTADDLKGK KVGVGLGTNY EEWLRQNVQG VDVRTYDDDP 180
  181 TKYQDLRVGR IDAILVDRLA ALDLVKKTND TLAVTGEAFS RQESGVALRK GNEDLLKAVN 240
  241 DAIAEMQKDG TLQALSEKWF GADVTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1gggA
Description:	Glutamine-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
amine transmembrane transporter activity	4.06067446901213	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
organic acid transmembrane transporter activity	4.00950407295699	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	4.00681079961203	bayes_pls_golite062009
polyamine transmembrane transporter activity	3.56664180812545	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.25040168593981	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.16446457499691	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.87472545473244	bayes_pls_golite062009
polyamine-transporting ATPase activity	2.84609722276735	bayes_pls_golite062009
amino acid binding	2.79295963421917	bayes_pls_golite062009
anion transmembrane transporter activity	2.77148301796671	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.58578176144479	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.58578176144479	bayes_pls_golite062009
amino acid transmembrane transporter activity	2.47628874886983	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
amine binding	2.37157043664258	bayes_pls_golite062009
polyamine binding	2.27573366139794	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
ion transmembrane transporter activity	1.70693655091183	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
amino acid-transporting ATPase activity	1.65232476690022	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
amine-transporting ATPase activity	1.59812090922796	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.99134553005852	bayes_pls_golite062009
catalytic activity	0.674312982669564	bayes_pls_golite062009
L-amino acid transmembrane transporter activity	0.29324308961663	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.230402103022499	bayes_pls_golite062009
putrescine transmembrane transporter activity	0.212254208912362	bayes_pls_golite062009
cation transmembrane transporter activity	0.119916745111395	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	0.0940079640524907	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	0.00844917716785965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: