YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3212630, gi\|1...
Organism:	Escherichia coli
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3212630, gi|1....

Description	E-value	Query Range	Subject Range
gi\|77957941 - gi\|77957941\|ref\|ZP_00821984.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	226.0	[0..2]	[224..40]
gi\|94986288, gi\|... - gi\|94986288\|ref\|YP_605652.1\| extracellular solute-binding protein [Deinococcus geothermalis DSM 1130...	226.0	[0..1]	[226..48]
gi\|238717579, gi... - gi\|77961132\|ref\|ZP_00824978.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	226.0	[0..2]	[224..46]
gi\|16122097, gi\|... - gi\|218928965\|ref\|YP_002346840.1\| cystine transporter subunit [Yersinia pestis CO92], gi\|16122097\|ref... gi\|166010832, gi... - gi\|166010832\|ref\|ZP_02231730.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|165925949, gi... - gi\|165925949\|ref\|ZP_02221781.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ori... gi\|167401164, gi... - gi\|167401164\|ref\|ZP_02306667.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|166207832, gi... - gi\|166210652\|ref\|ZP_02236687.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ant... gi\|167055180, gi... - gi\|167425781\|ref\|ZP_02317534.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Med... gi\|166961845, gi... - gi\|167420150\|ref\|ZP_02311903.1\| cystine-binding periplasmic protein FliY [Yersinia pestis biovar Ori... gi\|149292621, gi... - gi\|149366208\|ref\|ZP_01888243.1\| putative cystine-binding periplasmic protein [Yersinia pestis CA88-4... gi\|229701217, gi... - gi\|229896294\|ref\|ZP_04511464.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|165913394, gi... - gi\|89105430\|ref\|ZP_01177949.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|229693568, gi... - gi\|229897231\|ref\|ZP_04512387.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|162353595, gi... - gi\|77635978\|ref\|ZP_00798056.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|108779131, gi... - gi\|108807218\|ref\|YP_651134.1\| cystine transporter subunit [Yersinia pestis Antiqua], gi\|108779131\|gb... gi\|229897958, gi... - gi\|229897958\|ref\|ZP_04513109.1\| cystine transporter subunit; periplasmic-binding component of ABC su... gi\|117673858, gi... - gi\|77628915\|ref\|ZP_00791501.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|229680258, gi... - gi\|229902811\|ref\|ZP_04517928.1\| cystine transporter subunit; periplasmic-binding component of ABC su... Q66BQ3\|Q66BQ3_YERPS - Putative cystine-binding periplasmic protein precursor - Yersinia pseudotuberculosis gi\|186895159, gi... - gi\|186895159\|ref\|YP_001872271.1\| cystine transporter subunit [Yersinia pseudotuberculosis PB1/+], gi... gi\|170024601, gi... - gi\|170024601\|ref\|YP_001721106.1\| cystine transporter subunit [Yersinia pseudotuberculosis YPIII], gi... gi\|22126343, gi\|... - gi\|22126343\|ref\|NP_669766.1\| cystine transporter subunit [Yersinia pestis KIM], gi\|21959325\|gb\|AAM86... gi\|25296340 - pir\|\|AC0225 probable cystine-binding periplasmic protein fliY [imported] - Yersinia pestis (strain C... gi\|51596053, gi\|... - gi\|51596053\|ref\|YP_070244.1\| cystine transporter subunit [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|45441366, gi\|... - gi\|45441366\|ref\|NP_992905.1\| cystine transporter subunit [Yersinia pestis biovar Microtus str. 91001...	225.0	[0..2]	[224..40]
gi\|77979904 - gi\|77979904\|ref\|ZP_00835320.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	225.0	[0..2]	[224..46]
gi\|77975692 - gi\|77975692\|ref\|ZP_00831226.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	225.0	[0..2]	[224..40]
gi\|253773127, gi... - gi\|253773127\|ref\|YP_003035958.1\| extracellular solute-binding protein family 3 [Escherichia coli BL2... gi\|117624062, gi... - gi\|117624062\|ref\|YP_852975.1\| cystine transporter subunit [Escherichia coli APEC O1], gi\|115513186\|g... gi\|237705876, gi... - gi\|237705876\|ref\|ZP_04536357.1\| cystine-binding periplasmic protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|26108591, gi\|... - gi\|26248187\|ref\|NP_754227.1\| cystine transporter subunit [Escherichia coli CFT073], gi\|26108591\|gb\|A... gi\|91072713, gi\|... - gi\|91211139\|ref\|YP_541125.1\| cystine transporter subunit [Escherichia coli UTI89], gi\|91072713\|gb\|AB... tr\|A0A0G3HGM5\|A0... - Cystine transporter subunit protein OS=Escherichia coli (strain K12) GN=fliY PE=3 SV=1	221.0	[0..2]	[224..59]
gi\|82776400, gi\|... - gi\|82776400\|ref\|YP_402749.1\| cystine transporter subunit [Shigella dysenteriae Sd197], gi\|81240548\|g...	221.0	[0..2]	[224..40]
gi\|25296351, gi\|... - gi\|25296351\|pir\|\|AC0601 glutamine-binding periplasmic protein precursor [imported] - Salmonella ente... gi\|16419336, gi\|... - gi\|16764192\|ref\|NP_459807.1\| glutamine ABC transporter periplasmic protein [Salmonella typhimurium L... gi\|1649035 - gi\|1649035\|gb\|AAB49427.1\| high-affinity periplasmic glutamine binding protein [Salmonella typhimuriu... gi\|29142479, gi\|... - gi\|29142479\|ref\|NP_805821.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica subs... gi\|16759748 - gi\|16759748\|ref\|NP_455365.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica subs... gi\|168240698, gi... - gi\|205340418\|gb\|EDZ27182.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|197290080, gi... - gi\|197290080\|gb\|EDY29437.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|168230732, gi... - gi\|205334678\|gb\|EDZ21442.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|205329625, gi... - gi\|205329625\|gb\|EDZ16389.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|194450493, gi... - gi\|194450493\|ref\|YP_002044858.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica ... gi\|194401086, gi... - gi\|194442423\|ref\|YP_002040066.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [S... gi\|168820020, gi... - gi\|205343029\|gb\|EDZ29793.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|168466431, gi... - gi\|195630984\|gb\|EDX49570.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|167550477, gi... - gi\|205324505\|gb\|EDZ12344.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Salmon... gi\|161364282, gi... - gi\|161614918\|ref\|YP_001588883.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica ... gi\|213859569 - gi\|213859569\|ref\|ZP_03385273.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s... gi\|213649899 - gi\|213649899\|ref\|ZP_03379952.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s... gi\|213424777 - gi\|213424777\|ref\|ZP_03357527.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s... gi\|213423458 - gi\|213423458\|ref\|ZP_03356440.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s... gi\|197264430, gi... - gi\|197264430\|ref\|ZP_03164504.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Sa... gi\|197248579, gi... - gi\|197248579\|ref\|YP_002145786.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [S... gi\|194738210, gi... - gi\|194738210\|ref\|YP_002113921.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [S... gi\|194470062, gi... - gi\|194470062\|ref\|ZP_03076046.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Sa... gi\|213163837 - gi\|213163837\|ref\|ZP_03349547.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s... gi\|1649035\|gb\|AA... - high-affinity periplasmic glutamine binding protein [Salmonella typhimurium] gi\|207856266, gi... - gi\|207856266\|ref\|YP_002242917.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica ... gi\|204929924, gi... - gi\|204929924\|ref\|ZP_03220945.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Sa... gi\|199603432, gi... - gi\|200390987\|ref\|ZP_03217598.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Sa... lcl\|NC_016856.1_... - [gene=glnH] [protein=glutamine ABC transporter periplasmic protein] [protein_id=YP_005236557.1] [loc... gi\|238913896 - gi\|238913896\|ref\|ZP_04657733.1\| glutamine ABC transporter periplasmic protein [Salmonella enterica s...	221.0	[0..1]	[226..23]
GLNH_ECOLI - Glutamine-binding periplasmic protein precursor (GlnBP) - Escherichia coli GLNH_ECOL6 - Glutamine-binding periplasmic protein OS=Escherichia coli O6 GN=glnH PE=2 SV=1 gi\|254591406, gi... - gi\|254792006\|ref\|YP_003076843.1\| glutamine transporter subunit; periplasmic binding component of ABC... gi\|254160888, gi... - gi\|254160888\|ref\|YP_003043996.1\| glutamine ABC transporter periplasmic protein [Escherichia coli B s... gi\|254287702, gi... - gi\|254287702\|ref\|YP_003053450.1\| glutamine ABC transporter periplasmic protein [Escherichia coli BL2... gi\|251784330, gi... - gi\|251784330\|ref\|YP_002998634.1\| hypothetical protein B21_00795 [Escherichia coli BL21], gi\|24237660... gi\|117622992, gi... - gi\|117622992\|ref\|YP_851905.1\| glutamine ABC transporter periplasmic protein [Escherichia coli APEC O... gi\|238900070, gi... - gi\|238900070\|ref\|YP_002925866.1\| glutamine transporter subunit [Escherichia coli BW2952], gi\|2388613... gi\|124527029, gi... - gi\|124527029\|ref\|ZP_01698866.1\| cationic amino acid ABC transporter, periplasmic binding protein [Es... gi\|226898439, gi... - gi\|237707229\|ref\|ZP_04537710.1\| periplasmic glutamine-binding protein [Escherichia sp. 3_2_53FAA], g... gi\|227884226, gi... - gi\|227884226\|ref\|ZP_04002031.1\| amino acid ABC superfamily ATP binding cassette transporter, binding... gi\|170020833, gi... - gi\|170020833\|ref\|YP_001725787.1\| glutamine ABC transporter periplasmic protein [Escherichia coli ATC... gi\|170080470, gi... - gi\|170080470\|ref\|YP_001729790.1\| glutamine ABC transporter periplasmic binding protein [Escherichia ... gi\|170680496, gi... - gi\|170680496\|ref\|YP_001742915.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [E... gi\|195936852 - gi\|195936852\|ref\|ZP_03082234.1\| glutamine ABC transporter periplasmic protein [Escherichia coli O157... gi\|208729401, gi... - gi\|208809600\|ref\|ZP_03251937.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Es... gi\|208814977, gi... - gi\|208814977\|ref\|ZP_03256156.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Es... gi\|208822633, gi... - gi\|208822633\|ref\|ZP_03262952.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Es... gi\|209158553, gi... - gi\|209397153\|ref\|YP_002269481.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [E... gi\|168749990, gi... - gi\|188015745\|gb\|EDU53867.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|189356243, gi... - gi\|189356243\|gb\|EDU74662.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|189365671, gi... - gi\|189365671\|gb\|EDU84087.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|168767316, gi... - gi\|189363471\|gb\|EDU81890.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|189003061, gi... - gi\|189003061\|gb\|EDU72047.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|168787027, gi... - gi\|189373187\|gb\|EDU91603.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|189377799, gi... - gi\|189377799\|gb\|EDU96215.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Escher... gi\|81244668, gi\|... - gi\|82543257\|ref\|YP_407204.1\| glutamine ABC transporter periplasmic protein [Shigella boydii Sb227], ... gi\|194413753, gi... - gi\|75210594\|ref\|ZP_00710742.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|209911317, gi... - gi\|209918058\|ref\|YP_002292142.1\| glutamine ABC transporter periplasmic protein [Escherichia coli SE1... gi\|75230655, gi\|... - gi\|75230655\|ref\|ZP_00717126.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|215263970, gi... - gi\|215485898\|ref\|YP_002328329.1\| glutamine ABC transporter periplasmic protein [Escherichia coli O12... gi\|157158136, gi... - gi\|75189852\|ref\|ZP_00703119.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|217322525, gi... - gi\|217326304\|ref\|ZP_03442388.1\| glutamine ABC transporter, glutamine-binding periplasmic protein [Es... gi\|157160288, gi... - gi\|75194962\|ref\|ZP_00705032.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|218360165, gi... - gi\|218553397\|ref\|YP_002386310.1\| glutamine ABC transporter periplasmic protein [Escherichia coli IAI... gi\|188494775, gi... - gi\|75512817\|ref\|ZP_00735309.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|218557716, gi... - gi\|218557716\|ref\|YP_002390629.1\| glutamine ABC transporter periplasmic protein [Escherichia coli S88... gi\|74311354, gi\|... - gi\|74311354\|ref\|YP_309773.1\| glutamine ABC transporter periplasmic protein [Shigella sonnei Ss046], ... gi\|218351017, gi... - gi\|218694285\|ref\|YP_002401952.1\| glutamine ABC transporter periplasmic protein [Escherichia coli 559... gi\|190905987, gi... - gi\|75238146\|ref\|ZP_00722150.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|218699185, gi... - gi\|218699185\|ref\|YP_002406814.1\| glutamine ABC transporter periplasmic protein [Escherichia coli IAI... gi\|193064406, gi... - gi\|75257591\|ref\|ZP_00729088.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|218431286, gi... - gi\|218704189\|ref\|YP_002411708.1\| glutamine ABC transporter periplasmic protein [Escherichia coli UMN... EG10386 - glutamine transporter subunit / Glutamine-binding protein, periplasmic gi\|83586114, gi\|... - gi\|83586114\|ref\|ZP_00924751.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|91071419, gi\|... - gi\|91209845\|ref\|YP_539831.1\| glutamine ABC transporter periplasmic protein [Escherichia coli UTI89],... gi\|13360348, gi\|... - gi\|15830143\|ref\|NP_308916.1\| glutamine ABC transporter periplasmic protein [Escherichia coli O157:H7... gi\|110342607, gi... - gi\|110641015\|ref\|YP_668743.1\| glutamine ABC transporter periplasmic protein [Escherichia coli 536], ... GLNH_ECO57 - Glutamine-binding periplasmic protein OS=Escherichia coli O157:H7 GN=glnH PE=3 SV=1 GLNH_ECOL6 - Glutamine-binding periplasmic protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... gi\|12513810, gi\|... - gi\|15800563\|ref\|NP_286575.1\| glutamine ABC transporter periplasmic protein [Escherichia coli O157:H7... EG10386 - glutamine transporter subunit / Glutamine-binding protein, periplasmic gi\|89107662, gi\|... - gi\|89107662\|ref\|AP_001442.1\| glutamine transporter subunit [Escherichia coli str. K-12 substr. W3110...	220.0	[0..1]	[226..23]

Back

Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADKKLVVATD TAFVPFEFKQ GDLYVGFDVD LWAAIAKELK LDYELKPMDF SGIIPALQTK  60
   61 NVDLALAGIT ITDERKKAID FSDGYYKSGL LVMVKANNND VKSVKDLDGK VVAVKSGTGS 120
  121 VDYAKANIKT KDLRQFPNID NAYMELGTNR ADAVLHDTPN ILYFIKTAGN GQFKAVGDSL 180
  181 EAQQYGIAFP KGSDELRDKV NGALKTLREN GTYNEIYKKW FGTEPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	1gggA
Description:	Glutamine-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
amine transmembrane transporter activity	4.06067446901213	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
organic acid transmembrane transporter activity	4.00950407295699	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	4.00681079961203	bayes_pls_golite062009
polyamine transmembrane transporter activity	3.56664180812545	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.25040168593981	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.16446457499691	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.87472545473244	bayes_pls_golite062009
polyamine-transporting ATPase activity	2.84609722276735	bayes_pls_golite062009
amino acid binding	2.79295963421917	bayes_pls_golite062009
anion transmembrane transporter activity	2.77148301796671	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.58578176144479	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.58578176144479	bayes_pls_golite062009
amino acid transmembrane transporter activity	2.47628874886983	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
amine binding	2.37157043664258	bayes_pls_golite062009
polyamine binding	2.27573366139794	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
ion transmembrane transporter activity	1.70693655091183	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
amino acid-transporting ATPase activity	1.65232476690022	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
amine-transporting ATPase activity	1.59812090922796	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.99134553005852	bayes_pls_golite062009
catalytic activity	0.674312982669564	bayes_pls_golite062009
L-amino acid transmembrane transporter activity	0.29324308961663	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.230402103022499	bayes_pls_golite062009
putrescine transmembrane transporter activity	0.212254208912362	bayes_pls_golite062009
cation transmembrane transporter activity	0.119916745111395	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	0.0940079640524907	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	0.00844917716785965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: