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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.919920397588]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear inner membrane 2.779E-6 2 11 2 6292
nuclear membrane 2.3525E-4 2 97 2 6292
organelle inner membrane 8.5997E-4 2 185 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
tRNA-intron endonuclease complex 1.5888E-3 2 5 1 6292
endomembrane system 3.9918E-3 2 398 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA splicing, via endonucleolytic cleavage and ligation 6.0632E-6 2 16 2 6292
RNA splicing, via endonucleolytic cleavage and ligation 6.0632E-6 2 16 2 6292
tRNA processing 1.7194E-4 2 83 2 6292
tRNA metabolic process 3.6076E-4 2 120 2 6292
RNA splicing 4.3685E-4 2 132 2 6292
UFP-specific transcription factor mRNA processing during unfolded protein response 6.3568E-4 2 2 1 6292
ncRNA processing 1.1624E-3 2 215 2 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
ER-nucleus signaling pathway 3.1764E-3 2 10 1 6292
endoplasmic reticulum unfolded protein response 3.1764E-3 2 10 1 6292
cellular response to biotic stimulus 3.1764E-3 2 10 1 6292
cellular response to unfolded protein 3.1764E-3 2 10 1 6292
cellular response to protein stimulus 3.1764E-3 2 10 1 6292
response to endoplasmic reticulum stress 3.1764E-3 2 10 1 6292
RNA processing 3.6384E-3 2 380 2 6292
response to unfolded protein 6.3477E-3 2 20 1 6292
response to biotic stimulus 6.3477E-3 2 20 1 6292
cellular response to organic substance 6.3477E-3 2 20 1 6292
response to protein stimulus 6.3477E-3 2 20 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA ligase (ATP) activity 3.1786E-4 2 1 1 6292
RNA ligase activity 3.1786E-4 2 1 1 6292
GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity 3.1786E-4 2 1 1 6292
polynucleotide kinase activity 3.1786E-4 2 1 1 6292
GTP-dependent polynucleotide kinase activity 3.1786E-4 2 1 1 6292
polyribonucleotide kinase activity 3.1786E-4 2 1 1 6292
2',3'-cyclic-nucleotide 3'-phosphodiesterase activity 6.3568E-4 2 2 1 6292
cyclic-nucleotide phosphodiesterase activity 1.2712E-3 2 4 1 6292
ligase activity, forming phosphoric ester bonds 1.2712E-3 2 4 1 6292
tRNA-intron endonuclease activity 1.5888E-3 2 5 1 6292
endoribonuclease activity, producing 3'-phosphomonoesters 1.5888E-3 2 5 1 6292
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters 2.859E-3 2 9 1 6292
hydrolase activity, acting on ester bonds 2.929E-3 2 341 2 6292
nucleobase, nucleoside, nucleotide kinase activity 3.811E-3 2 12 1 6292
phosphoric diester hydrolase activity 4.7627E-3 2 15 1 6292
tRNA-specific ribonuclease activity 4.7627E-3 2 15 1 6292
endoribonuclease activity 8.5646E-3 2 27 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle