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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.929486555963]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

MCM complex 1.0611E-6 2 7 2 6292
pre-replicative complex 6.0632E-6 2 16 2 6292
protein-DNA complex 8.0641E-5 2 57 2 6292
nuclear chromosome part 9.0721E-4 2 190 2 6292
nuclear chromosome 1.3075E-3 2 228 2 6292
chromosomal part 1.413E-3 2 237 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
chromosome 1.8898E-3 2 274 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA unwinding involved in replication 4.5979E-6 2 14 2 6292
DNA geometric change 9.6001E-6 2 20 2 6292
DNA duplex unwinding 9.6001E-6 2 20 2 6292
DNA replication initiation 2.6678E-5 2 33 2 6292
DNA conformation change 8.3521E-5 2 58 2 6292
DNA-dependent DNA replication 1.678E-4 2 82 2 6292
DNA replication 3.791E-4 2 123 2 6292
pre-replicative complex assembly 4.1283E-3 2 13 1 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent DNA helicase activity 7.7306E-6 2 18 2 6292
chromatin binding 2.6678E-5 2 33 2 6292
DNA helicase activity 2.8346E-5 2 34 2 6292
ATP-dependent helicase activity 5.6994E-5 2 48 2 6292
purine NTP-dependent helicase activity 5.6994E-5 2 48 2 6292
DNA-dependent ATPase activity 7.5032E-5 2 55 2 6292
helicase activity 1.7194E-4 2 83 2 6292
ATPase activity, coupled 5.5711E-4 2 149 2 6292
ATPase activity 1.1194E-3 2 211 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle