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View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

delta DNA polymerase complex 9.6394E-11 4 3 3 6292
replication fork 1.7156E-9 4 42 4 6292
DNA polymerase complex 1.1558E-8 4 10 3 6292
nuclear replisome 7.8517E-8 4 18 3 6292
replisome 7.8517E-8 4 18 3 6292
nuclear replication fork 1.0967E-7 4 20 3 6292
chromosomal part 1.9643E-6 4 237 4 6292
protein-DNA complex 2.8023E-6 4 57 3 6292
chromosome 3.5214E-6 4 274 4 6292
nuclear chromosome part 1.0604E-4 4 190 3 6292
nuclear chromosome 1.8288E-4 4 228 3 6292
non-membrane-bounded organelle 5.368E-4 4 959 4 6292
intracellular non-membrane-bounded organelle 5.368E-4 4 959 4 6292
PCNA complex 6.3573E-4 4 1 1 6292
protein complex 1.0617E-3 4 1137 4 6292
macromolecular complex 4.5471E-3 4 1635 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mutagenesis 1.9313E-12 4 9 4 6292
base-excision repair 7.5871E-12 4 12 4 6292
leading strand elongation 2.0922E-11 4 15 4 6292
postreplication repair 4.6902E-11 4 18 4 6292
lagging strand elongation 4.6902E-11 4 18 4 6292
mismatch repair 2.69E-10 4 27 4 6292
DNA strand elongation 4.8228E-10 4 31 4 6292
DNA strand elongation involved in DNA replication 4.8228E-10 4 31 4 6292
nucleotide-excision repair 1.1314E-9 4 38 4 6292
obsolete_biological_process 7.4742E-9 4 60 4 6292
DNA-dependent DNA replication 2.6809E-8 4 82 4 6292
DNA replication 1.3915E-7 4 123 4 6292
DNA repair 8.4103E-7 4 192 4 6292
response to DNA damage stimulus 1.9311E-6 4 236 4 6292
cellular response to stress 4.4241E-6 4 290 4 6292
cellular response to stimulus 1.2969E-5 4 379 4 6292
response to stress 3.8497E-5 4 497 4 6292
DNA metabolic process 7.4032E-5 4 585 4 6292
response to stimulus 2.1816E-4 4 766 4 6292
maintenance of fidelity involved in DNA-dependent DNA replication 6.3573E-4 4 1 1 6292
cellular macromolecule biosynthetic process 1.2614E-3 4 1187 4 6292
macromolecule biosynthetic process 1.27E-3 4 1189 4 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
cellular biosynthetic process 3.8359E-3 4 1567 4 6292
biosynthetic process 4.1907E-3 4 1602 4 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

single-stranded DNA specific exodeoxyribonuclease activity 9.6394E-11 4 3 3 6292
single-stranded DNA specific 3'-5' exodeoxyribonuclease activity 9.6394E-11 4 3 3 6292
3'-5'-exodeoxyribonuclease activity 1.9272E-9 4 6 3 6292
exodeoxyribonuclease activity, producing 5'-phosphomonoesters 5.3949E-9 4 8 3 6292
exodeoxyribonuclease activity 8.0913E-9 4 9 3 6292
deoxyribonuclease activity 3.5113E-7 4 29 3 6292
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 5.7469E-7 4 34 3 6292
3'-5' exonuclease activity 6.2849E-7 4 35 3 6292
exonuclease activity 1.4558E-6 4 46 3 6292
nuclease activity 1.2179E-4 4 199 3 6292
hydrolase activity, acting on ester bonds 6.0599E-4 4 341 3 6292
DNA polymerase processivity factor activity 6.3573E-4 4 1 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle