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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribonucleoprotein complex 3.5735E-6 5 514 5 6292
nuclear outer membrane 2.4177E-5 5 86 3 6292
nuclear membrane 3.4739E-5 5 97 3 6292
outer membrane 2.1352E-4 5 178 3 6292
organelle outer membrane 2.1352E-4 5 178 3 6292
nuclear envelope 2.9737E-4 5 199 3 6292
nuclear membrane-endoplasmic reticulum network 4.6842E-4 5 232 3 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
small nucleolar ribonucleoprotein complex 1.263E-3 5 72 2 6292
box C/D snoRNP complex 1.5888E-3 5 2 1 6292
endomembrane system 2.2823E-3 5 398 3 6292
envelope 4.5459E-3 5 505 3 6292
organelle envelope 4.5459E-3 5 505 3 6292
membrane part 9.8527E-3 5 662 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 7.7299E-6 5 59 3 6292
ribosome biogenesis 4.3019E-5 5 346 4 6292
ribonucleoprotein complex biogenesis 5.8585E-5 5 374 4 6292
rRNA modification 7.6913E-5 5 18 2 6292
rRNA processing 7.9834E-5 5 128 3 6292
rRNA metabolic process 9.7825E-5 5 137 3 6292
gene expression 3.5034E-4 5 1283 5 6292
ncRNA processing 3.7398E-4 5 215 3 6292
ncRNA metabolic process 6.3367E-4 5 257 3 6292
cellular component biogenesis 6.6989E-4 5 694 4 6292
ribosomal large subunit biogenesis 1.0301E-3 5 65 2 6292
RNA modification 1.194E-3 5 70 2 6292
RNA processing 1.9946E-3 5 380 3 6292
snoRNA 3'-end processing 3.9682E-3 5 5 1 6292
snoRNA processing 5.552E-3 5 7 1 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292
ncRNA 3'-end processing 9.5026E-3 5 12 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle