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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
EMG1
  • nucleus
  • cytoplasm
  • nuclear microtubule
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • ENP1
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • preribosome, small subunit precursor
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • MPP10
  • nucleus
  • small-subunit processome
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • molecular_function
  • NOP1
  • nuclear outer membrane
  • nucleolus
  • ribosome
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • RNA methylation
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • snoRNA 3'-end processing
  • methyltransferase activity
  • PNO1
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • protein complex assembly
  • ribosome biogenesis
  • rRNA processing
  • unfolded protein binding
  • RPS13
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RRP12
  • nucleus
  • ribosome
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • molecular_function
  • UTP10
  • mitochondrion
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • UTP20
  • cytoplasm
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • rRNA processing
  • snoRNA binding
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    nuclear outer membrane 8.0791E-12 10 86 7 6292
    nuclear membrane 1.9226E-11 10 97 7 6292
    small nucleolar ribonucleoprotein complex 3.6808E-10 10 72 6 6292
    ribonucleoprotein complex 1.4088E-9 10 514 9 6292
    outer membrane 1.4414E-9 10 178 7 6292
    organelle outer membrane 1.4414E-9 10 178 7 6292
    nuclear envelope 3.1583E-9 10 199 7 6292
    nucleolus 4.7631E-9 10 211 7 6292
    nuclear membrane-endoplasmic reticulum network 9.2554E-9 10 232 7 6292
    non-membrane-bounded organelle 3.7143E-7 10 959 9 6292
    intracellular non-membrane-bounded organelle 3.7143E-7 10 959 9 6292
    endomembrane system 3.9119E-7 10 398 7 6292
    nuclear lumen 9.5088E-7 10 453 7 6292
    envelope 1.9976E-6 10 505 7 6292
    organelle envelope 1.9976E-6 10 505 7 6292
    organelle lumen 1.2248E-5 10 660 7 6292
    intracellular organelle lumen 1.2248E-5 10 660 7 6292
    membrane part 1.25E-5 10 662 7 6292
    organelle membrane 1.6837E-5 10 692 7 6292
    preribosome 1.6862E-5 10 34 3 6292
    membrane-enclosed lumen 1.8187E-5 10 700 7 6292
    macromolecular complex 4.0767E-5 10 1635 9 6292
    nuclear part 3.6626E-4 10 1103 7 6292
    membrane 6.2411E-4 10 1198 7 6292
    nucleus 2.7794E-3 10 2041 8 6292
    intracellular organelle part 6.1675E-3 10 2282 8 6292
    organelle part 6.1675E-3 10 2282 8 6292
    ribosome 9.1321E-3 10 290 3 6292
    small-subunit processome 9.5019E-3 10 6 1 6292
    nuclear microtubule 9.5019E-3 10 6 1 6292
    preribosome, small subunit precursor 9.5019E-3 10 6 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    rRNA processing 1.025E-12 10 128 8 6292
    rRNA metabolic process 1.7872E-12 10 137 8 6292
    ribosome biogenesis 3.963E-11 10 346 9 6292
    ncRNA processing 6.9391E-11 10 215 8 6292
    ribonucleoprotein complex biogenesis 8.0128E-11 10 374 9 6292
    maturation of SSU-rRNA 1.0691E-10 10 59 6 6292
    ncRNA metabolic process 2.92E-10 10 257 8 6292
    RNA processing 6.6673E-9 10 380 8 6292
    cellular component biogenesis 2.0804E-8 10 694 9 6292
    gene expression 4.872E-6 10 1283 9 6292
    RNA metabolic process 9.1999E-6 10 954 8 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.757E-4 10 13 2 6292
    nucleic acid metabolic process 1.8614E-4 10 1415 8 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.9771E-4 10 1566 8 6292
    cellular macromolecule metabolic process 7.3309E-4 10 2285 9 6292
    macromolecule metabolic process 9.2762E-4 10 2349 9 6292
    cellular nitrogen compound metabolic process 9.8474E-4 10 1770 8 6292
    nitrogen compound metabolic process 1.0739E-3 10 1791 8 6292
    ncRNA 5'-end processing 4.7611E-3 10 3 1 6292
    endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.7611E-3 10 3 1 6292
    endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.7611E-3 10 3 1 6292
    rRNA 5'-end processing 4.7611E-3 10 3 1 6292
    RNA 5'-end processing 4.7611E-3 10 3 1 6292
    primary metabolic process 5.4001E-3 10 2896 9 6292
    maturation of 5.8S rRNA 6.3436E-3 10 4 1 6292
    cleavage involved in rRNA processing 6.3436E-3 10 4 1 6292
    maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6.3436E-3 10 4 1 6292
    endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6.3436E-3 10 4 1 6292
    endonucleolytic cleavage involved in rRNA processing 6.3436E-3 10 4 1 6292
    endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6.3436E-3 10 4 1 6292
    cellular metabolic process 7.9165E-3 10 3033 9 6292
    snoRNA 3'-end processing 7.9239E-3 10 5 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    snoRNA binding 9.9209E-8 10 31 4 6292
    RNA binding 1.8047E-3 10 367 4 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle