| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.513469730125] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA cleavage and polyadenylation specificity factor complex | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| mRNA cleavage factor complex | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| Set1C/COMPASS complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| methyltransferase complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| histone methyltransferase complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone methyltransferase activity (H3-K4 specific) | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| histone methyltransferase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| histone-lysine N-methyltransferase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| lysine N-methyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein-lysine N-methyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein methyltransferase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| N-methyltransferase activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |