| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.539778175988] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| replication fork | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| delta DNA polymerase complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| DNA polymerase complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| nuclear replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| nuclear replication fork | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| base-excision repair | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| lagging strand elongation | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| DNA strand elongation | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| DNA strand elongation involved in DNA replication | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| nucleotide-excision repair | 3.552E-5 | 2 | 38 | 2 | 6292 |
| DNA-dependent DNA replication | 1.678E-4 | 2 | 82 | 2 | 6292 |
| DNA ligation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| DNA replication | 3.791E-4 | 2 | 123 | 2 | 6292 |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| mutagenesis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| leading strand elongation | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| postreplication repair | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| mismatch repair | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA ligase (ATP) activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| DNA ligase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| single-stranded DNA specific exodeoxyribonuclease activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| ligase activity, forming phosphoric ester bonds | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| 3'-5'-exodeoxyribonuclease activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| exodeoxyribonuclease activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| deoxyribonuclease activity | 9.1975E-3 | 2 | 29 | 1 | 6292 |