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Protein Overview: UFD4

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data UFD4 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..72] deduced N/A No confident structure predictions are available.
2 View Details [73..158] PSI-BLAST 2.09691 STRUCTURE OF IMPORTIN BETA BOUND TO THE IBB DOMAIN OF IMPORTIN ALPHA
3 View Details [159..294] PSI-BLAST 113.0 Importin alpha
4 View Details [295..343] PSI-BLAST 113.0 Importin alpha
5 View Details [344..457] PSI-BLAST 113.0 Importin alpha
6 View Details [458..568] PSI-BLAST 113.0 Importin alpha
7 View Details [569..670] PSI-BLAST 113.0 Importin alpha
8 View Details [671..973] deduced N/A No confident structure predictions are available.
9 View Details [974..1092] PSI-BLAST 3.09691 Ubiquitin ligase NEDD4 WWIII domain
10 View Details [1093..1138] PSI-BLAST 323.0103 Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap)
11 View Details [1139..1263]
[1318..1360]
PSI-BLAST 323.0103 Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap)
12 View Details [1264..1317]
[1361..1483]
PSI-BLAST 323.0103 Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap)

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • binding
  • 2.86831493830281 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 2.16002474842826 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
  • 1.81334106667983 bayes_pls_golite062009
  • protein binding
  • 1.63705839411934 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
  • 1.4929266246031 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
  • 1.21098157405785 bayes_pls_golite062009
  • nucleic acid binding
  • 1.13208464017585 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 1.1051743850645 bayes_pls_golite062009
  • cation transmembrane transporter activity
  • 1.03004697855361 bayes_pls_golite062009
  • protein transporter activity
  • 0.942980596902738 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 0.820796192007653 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 0.520600504671387 bayes_pls_golite062009
  • kinase activity
  • 0.49215920455609 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.399777570162093 bayes_pls_golite062009
  • protein kinase activity
  • 0.304524178731686 bayes_pls_golite062009
  • transferase activity
  • 0.23030640245878 bayes_pls_golite062009
  • transcription regulator activity
  • 0.221086931523202 bayes_pls_golite062009
  • DNA binding
  • 0.171056781378569 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • proline-rich region binding
  • 2.77294348104858 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 2.59532734096591 bayes_pls_golite062009
  • binding
  • 2.42370909657521 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 2.41863405676058 bayes_pls_golite062009
  • transcription factor binding
  • 1.96854466908038 bayes_pls_golite062009
  • histone methyltransferase activity
  • 1.90194027965368 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 1.6967322982151 bayes_pls_golite062009
  • protein binding
  • 1.36920369713546 bayes_pls_golite062009
  • transcription regulator activity
  • 1.32260772865135 bayes_pls_golite062009
  • lysine N-methyltransferase activity
  • 1.14806422628668 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
  • 1.14806422628668 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
  • 1.14806422628668 bayes_pls_golite062009
  • protein methyltransferase activity
  • 1.121001087082 bayes_pls_golite062009
  • transcription activator activity
  • 1.06699689139974 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.9852373289585 bayes_pls_golite062009
  • transcription coactivator activity
  • 0.91931537361124 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
  • 0.568363753662296 bayes_pls_golite062009
  • transferase activity
  • 0.381275448590978 bayes_pls_golite062009
  • transcription repressor activity
  • 0.2295693429366 bayes_pls_golite062009
  • catalytic activity
  • 0.210712504691113 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K36 specific)
  • 0.173723075520888 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.
    11 No functions predicted.
    12 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle