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Protein Overview: RTT101

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen RTT101 OPI3 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RTT101 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..369]
[383..396]
PSI-BLAST 164.0 Anaphase promoting complex (APC); Cullin homolog 1, Cul-1; Cullin homolog 1, cul-1
2 View Details [370..382]
[397..551]
PSI-BLAST 164.0 Anaphase promoting complex (APC); Cullin homolog 1, Cul-1; Cullin homolog 1, cul-1
3 View Details [552..649] PSI-BLAST 164.0 Anaphase promoting complex (APC); Cullin homolog 1, Cul-1; Cullin homolog 1, cul-1
4 View Details [650..773] PSI-BLAST 164.0 Anaphase promoting complex (APC); Cullin homolog 1, Cul-1; Cullin homolog 1, cul-1
5 View Details [774..842] PSI-BLAST 164.0 Anaphase promoting complex (APC); Cullin homolog 1, Cul-1; Cullin homolog 1, cul-1

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • transcription regulator activity
  • 4.44907471960058 bayes_pls_golite062009
  • transcription factor activity
  • 3.48782936574155 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 3.04993477724372 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 3.01842842236076 bayes_pls_golite062009
  • transcription repressor activity
  • 2.39237599101586 bayes_pls_golite062009
  • binding
  • 2.3219000606044 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 2.07503944671713 bayes_pls_golite062009
  • transcription activator activity
  • 1.69071209162619 bayes_pls_golite062009
  • ligase activity
  • 1.56500586430034 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.2152419300113 bayes_pls_golite062009
  • nucleic acid binding
  • 1.19889127256113 bayes_pls_golite062009
  • protein binding
  • 1.15192193279649 bayes_pls_golite062009
  • DNA binding
  • 0.906045577633981 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.851238175736283 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
  • 0.602749768906734 bayes_pls_golite062009
  • catalytic activity
  • 0.201606344181603 bayes_pls_golite062009
  • transcription factor binding
  • 0.18566280876224 bayes_pls_golite062009
  • bubble DNA binding
  • 0.163558276321259 bayes_pls_golite062009
  • specific transcriptional repressor activity
  • 0.0565989703351002 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle