| General Information: |
|
| Name(s) found: |
SSD1 /
YDR293C
[SGD]
|
| Description(s) found:
Found 31 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 1250 amino acids |
Gene Ontology: |
|
| Cellular Component: |
cytoplasm
[IDA ]
|
| Biological Process: |
response to drug
[IMP]
cellular cell wall organization [IGI ]
replicative cell aging [IMP ]
|
| Molecular Function: |
RNA binding
[IDA]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MSKNSNVNNN RSQEPNNMFV QTTGGGKNAP KQIHVAHRRS QSELTNLMIE QFTLQKQLEQ 60
61 VQAQQQQLMA QQQQLAQQTG QYLSGNSGSN NHFTPQPPHP HYNSNGNSPG MSAGGSRSRT 120
121 HSRNNSGYYH NSYDNNNNSN NPGSNSHRKT SSQSSIYGHS RRHSLGLNEA KKAAAEEQAK 180
181 RISGGEAGVT VKIDSVQADS GSNSTTEQSD FKFPPPPNAH QGHRRATSNL SPPSFKFPPN 240
241 SHGDNDDEFI ATSSTHRRSK TRNNEYSPGI NSNWRNQSQQ PQQQLSPFRH RGSNSRDYNS 300
301 FNTLEPPAIF QQGHKHRASN SSVHSFSSQG NNNGGGRKSL FAPYLPQANI PELIQEGRLV 360
361 AGILRVNKKN RSDAWVSTDG ALDADIYICG SKDRNRALEG DLVAVELLVV DDVWESKKEK 420
421 EEKKRRKDAS MQHDLIPLNS SDDYHNDASV TAATSNNFLS SPSSSDSLSK DDLSVRRKRS 480
481 STINNDSDSL SSPTKSGVRR RSSLKQRPTQ KKNDDVEVEG QSLLLVEEEE INDKYKPLYA 540
541 GHVVAVLDRI PGQLFSGTLG LLRPSQQANS DNNKPPQSPK IAWFKPTDKK VPLIAIPTEL 600
601 APKDFVENAD KYSEKLFVAS IKRWPITSLH PFGILVSELG DIHDPDTEID SILRDNNFLS 660
661 NEYLDQKNPQ KEKPSFQPLP LTAESLEYRR NFTDTNEYNI FAISELGWVS EFALHVRNNG 720
721 NGTLELGCHV VDVTSHIEEG SSVDRRARKR SSAVFMPQKL VNLLPQSFND ELSLAPGKES 780
781 ATLSVVYTLD SSTLRIKSTW VGESTISPSN ILSLEQLDEK LSTGSPTSYL STVQEIARSF 840
841 YARRINDPEA TLLPTLSLLE SLDDEKVKVD LNILDRTLGF VVINEIKRKV NSTVAEKIYT 900
901 KLGDLALLRR QMQPIATKMA SFRKKIQNFG YNFDTNTADE LIKGVLKIKD DDVRVGIEIL 960
961 LFKTMPRARY FIAGKVDPDQ YGHYALNLPI YTHFTAPMRR YADHVVHRQL KAVIHDTPYT1020
1021 EDMEALKITS EYCNFKKDCA YQAQEQAIHL LLCKTINDMG NTTGQLLTMA TVLQVYESSF1080
1081 DVFIPEFGIE KRVHGDQLPL IKAEFDGTNR VLELHWQPGV DSATFIPADE KNPKSYRNSI1140
1141 KNKFRSTAAE IANIELDKEA ESEPLISDPL SKELSDLHLT VPNLRLPSAS DNKQNALEKF1200
1201 ISTTETRIEN DNYIQEIHEL QKIPILLRAE VGMALPCLTV RALNPFMKRV |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | Riffle et al. (2010) (Unpublished Data) |
|
PPH3 PSY2 PSY4 SPT5 SSD1 |
| View Details | Krogan NJ, et al. (2006) |
|
SAP190 SSD1 ZRG8 |
| View Details | Ho Y, et al. (2002) |
|
BFA1 BRX1 BUD3 CBK1 CCT2 CCT3 CCT6 CDC15 CIN8 CLU1 DUG2 ECM10 FAA4 GAL7 HIR1 HTB1 KRE33 MNP1 NAN1 NOP56 NUP53 POL5 PRB1 RNR1 RNR2 RRP12 RVB1 SGT2 SSD1 TEM1 TIF4631 TMA19 UBP15 UTP10 UTP22 UTP7 YTM1 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | No Comments | Reinke A, et al. (2004) | |
| View Run | 3906: TAP-tagged | Green EM, et al (2005) | |
| View Run | No Comments | Schneider, DA, et al. (2006) | |
| View Run | #32 Asynchronous Prep-No Phosphopeptide enrichment | Keck JM, et al. (2011) | |
| View Run | #12 Mitotic Prep1-TiO2 Flowthrough | Keck JM, et al. (2011) | |
| View Run | #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment | Keck JM, et al. (2011) | |
| View Run | #11 Mitotic Prep1-TiO2 enriched, new search criteria | Keck JM, et al. (2011) |
SHOWING SINGLE HITS. [ Hide Single Hits ]
| BAIT | PREY | HITS | PUBLICATION | |
| View Screen | 1 | Unpublished Fields Lab Data | ||
| View Screen | 1 | Unpublished Fields Lab Data |
New Feature: Upload Your Own Microscopy Data
| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..335] |  |
6.69897 | No description for 1y0fA was found. |
| 2 | View Details | [336..500] | |
1.25 | No description for 2ix1A was found. |
| 3 | View Details | [501..1164] | |
166.0 | No description for 2id0A was found. |
| 4 | View Details | [1165..1250] | |
N/A | No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.91 |
Source: Reynolds et al. (2008)