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View Structure Prediction Details

Protein: SSD1
Organism: Saccharomyces cerevisiae
Length: 1250 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSD1.

Description E-value Query
Range
Subject
Range
SSD1_CANAL - Virulence protein SSD1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SSD1 PE=2 SV=1
orf19.3959 - SSD1 CGDID:CAL0003016 Assembly 19, Contig19-10194 (112091, 108267) CDS, reverse complemented, transl...
945.0 [0..1] [1246..1]
gi|7493807, gi|2... - pir||T30524 protein phosphatase Ssd1 homolog - yeast (Candida albicans), gi|2459997|gb|AAC83386.1| p...
916.0 [0..21] [1235..15]
gi|85103635 - gi|85103635|ref|XP_961563.1| hypothetical protein NCU01197 [Neurospora crassa OR74A]
gi|32412420, gi|... - gi|32412420|ref|XP_326690.1| hypothetical protein [Neurospora crassa], gi|28923110|gb|EAA32327.1| hy...
849.0 [0..17] [1246..3]
gi|49526163, gi|... - gi|50288849|ref|XP_446854.1| unnamed protein product [Candida glabrata], gi|49526163|emb|CAG59787.1|...
gi|49526163 - gi|49526163|emb|CAG59787.1| unnamed protein product [Candida glabrata]
845.0 [0..100] [1248..173]
gi|49641804 - gi|49641804|emb|CAH01522.1| KLLA0C10571p [Kluyveromyces lactis]
gi|50305423, gi|... - gi|50305423|ref|XP_452671.1| unnamed protein product [Kluyveromyces lactis], gi|49641804|emb|CAH0152...
817.0 [0..22] [1248..9]
gi|49658096 - gi|49658096|emb|CAG90936.1| DEHA2G20328p [Debaryomyces hansenii]
gi|49658096, gi|... - gi|50427627|ref|XP_462426.1| hypothetical protein DEHA0G21615g [Debaryomyces hansenii CBS767], gi|49...
803.0 [0..17] [1246..18]
gi|44980098, gi|... - gi|45184752|ref|NP_982470.1| AAL072Cp [Ashbya gossypii ATCC 10895], gi|44980098|gb|AAS50294.1| AAL07...
gi|44980098 - gi|44980098|gb|AAS50294.1| AAL072Cp [Ashbya gossypii ATCC 10895]
784.0 [0..7] [1249..2]
gi|84095046 - gi|84095046|dbj|BAE66713.1| hypothetical protein [Colletotrichum lagenarium]
778.0 [0..337] [1246..11]
gi|42553696, gi|... - gi|46125263|ref|XP_387185.1| hypothetical protein FG07009.1 [Gibberella zeae PH-1], gi|42553696|gb|E...
773.0 [0..220] [1246..9]

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Predicted Domain #1
Region A:
Residues: [1-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNSNVNNN RSQEPNNMFV QTTGGGKNAP KQIHVAHRRS QSELTNLMIE QFTLQKQLEQ  60
   61 VQAQQQQLMA QQQQLAQQTG QYLSGNSGSN NHFTPQPPHP HYNSNGNSPG MSAGGSRSRT 120
  121 HSRNNSGYYH NSYDNNNNSN NPGSNSHRKT SSQSSIYGHS RRHSLGLNEA KKAAAEEQAK 180
  181 RISGGEAGVT VKIDSVQADS GSNSTTEQSD FKFPPPPNAH QGHRRATSNL SPPSFKFPPN 240
  241 SHGDNDDEFI ATSSTHRRSK TRNNEYSPGI NSNWRNQSQQ PQQQLSPFRH RGSNSRDYNS 300
  301 FNTLEPPAIF QQGHKHRASN SSVHSFSSQG NNNGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [336-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRKSLFAPYL PQANIPELIQ EGRLVAGILR VNKKNRSDAW VSTDGALDAD IYICGSKDRN  60
   61 RALEGDLVAV ELLVVDDVWE SKKEKEEKKR RKDASMQHDL IPLNSSDDYH NDASVTAATS 120
  121 NNFLSSPSSS DSLSKDDLSV RRKRSSTINN DSDSLSSPTK SGVRR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.25
Match: 2ix1A
Description: No description for 2ix1A was found.

Predicted Domain #3
Region A:
Residues: [501-1164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSLKQRPTQ KKNDDVEVEG QSLLLVEEEE INDKYKPLYA GHVVAVLDRI PGQLFSGTLG  60
   61 LLRPSQQANS DNNKPPQSPK IAWFKPTDKK VPLIAIPTEL APKDFVENAD KYSEKLFVAS 120
  121 IKRWPITSLH PFGILVSELG DIHDPDTEID SILRDNNFLS NEYLDQKNPQ KEKPSFQPLP 180
  181 LTAESLEYRR NFTDTNEYNI FAISELGWVS EFALHVRNNG NGTLELGCHV VDVTSHIEEG 240
  241 SSVDRRARKR SSAVFMPQKL VNLLPQSFND ELSLAPGKES ATLSVVYTLD SSTLRIKSTW 300
  301 VGESTISPSN ILSLEQLDEK LSTGSPTSYL STVQEIARSF YARRINDPEA TLLPTLSLLE 360
  361 SLDDEKVKVD LNILDRTLGF VVINEIKRKV NSTVAEKIYT KLGDLALLRR QMQPIATKMA 420
  421 SFRKKIQNFG YNFDTNTADE LIKGVLKIKD DDVRVGIEIL LFKTMPRARY FIAGKVDPDQ 480
  481 YGHYALNLPI YTHFTAPMRR YADHVVHRQL KAVIHDTPYT EDMEALKITS EYCNFKKDCA 540
  541 YQAQEQAIHL LLCKTINDMG NTTGQLLTMA TVLQVYESSF DVFIPEFGIE KRVHGDQLPL 600
  601 IKAEFDGTNR VLELHWQPGV DSATFIPADE KNPKSYRNSI KNKFRSTAAE IANIELDKEA 660
  661 ESEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 166.0
Match: 2id0A
Description: No description for 2id0A was found.

Predicted Domain #4
Region A:
Residues: [1165-1250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LISDPLSKEL SDLHLTVPNL RLPSASDNKQ NALEKFISTT ETRIENDNYI QEIHELQKIP  60
   61 ILLRAEVGMA LPCLTVRALN PFMKRV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle