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Protein Overview: CDC6A_ARATH

General Information:
Name(s) found: CDC6A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|20197388|gb|AAC35241.2| putative CDC6 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18402117|ref|NP_565686.1| CDC6 (CELL DIVISION CONTROL 6) [Arabidopsis thaliana] [NCBI NR]
  • Cell division control protein 6 homolog OS=Arabidopsis thaliana GN=CDC6 PE=2 SV=2 [Swiss-Prot]
  • (O82387) Putative CDC6 protein [athaliana3702.FASTAC.txt]
  • putative CDC6 protein [Arabidopsis thaliana]gi|18402117|ref|NP_565686.1| cell division control protein CDC6, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cell division control protein CDC6 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CDC6 | CDC6 | chr2:12696663-12699931 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CDC6 (cell division control protein 6) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CDC6 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CDC6, ATCDC6 | cell division control 6 | chr2:12689586-12692854 FORWARD LENGTH=539 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cell division control 6 OS=Arabidopsis thaliana GN=CDC6 PE=4 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 539 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: DNA replication [ISS]
    regulation of cell cycle [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST  60
   61 PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE VKSKWNPKDD EQMKAVKEAL 120
  121 HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA 180
  181 KQAGLHCPET VSVNCTSLTK STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR 240
  241 SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG TVFCVINVHF LKSVSYGQTS 300
  301 FKFKVRICPP GVANAIDLAD RFLPKLKSLN CKPLVVTFRA YSKDQILRIL QERLVALPFV 360
  361 AFQSNALEIC ARKVSAASGD MRKALCVCRS ALEILEIEVR GSIDQEPKGP VPECQVVKMD 420
  421 HMIAALSKTF KSPIVDTIQS LPQHQQIIVC SAAKAFRGSK KDRTIAELNK LYLEICKSSM 480
  481 ITPAGITEFS NMCTVLNDQG ILKLSLARDD KLKRVSLRVD EADITFALKE IRFFRNCLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..539] PSI-BLAST 48.0 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  2.66107861968804 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.51683451033161 bayes_pls_golite062009
  • DNA binding
    		•  2.12258000781149 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.04806869603661 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.18669029764243 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  1.00391607739958 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.97898060782084 bayes_pls_golite062009
  • transcription factor activity
    		•  0.887108427603557 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.862685397469217 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.795745617990735 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.782430219754236 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.78033069503386 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.771854032852428 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.71686176785564 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.6071273686445 bayes_pls_golite062009
  • motor activity
    		•  0.50661339105747 bayes_pls_golite062009
  • DNA replication origin binding
    		•  0.505079230166616 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.367559137329714 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18426050934025 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.14606996093053 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.13050483816765 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0530667986761242 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.028470639373934 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0265151533232588 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle