YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: cnp1

General Information:
Name(s) found: cnp1 / SPBC1105.17 [Sanger Pombe]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • CENP-A [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 120 amino acids

    Gene Ontology:
    Cellular Component: centromere-specific nucleosome [NASLink to PubMed article]
    nucleus [ICLink to PubMed article][IDALink to PubMed article]
    inner kinetochore of condensed chromosome [IDALink to PubMed article]
    condensed chromosome, centromeric region [IDALink to PubMed article]
    Biological Process: chromatin silencing at centromere [IMPLink to PubMed article]
    centromeric heterochromatin formation [IMPLink to PubMed article]
    protein localization to kinetochore [IGILink to PubMed article]
    mitotic sister chromatid segregation [IMPLink to PubMed article]
    sister chromatid biorientation [TASLink to PubMed article]
    kinetochore assembly [TASLink to PubMed article]
    nucleosome assembly [IEA]
    Molecular Function: protein binding [IGILink to PubMed article][IPILink to PubMed article]
    centromeric DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKSLMAEP GDPIPRPRKK RYRPGTTALR EIRKYQRSTD LLIQRLPFSR IVREISSEFV  60
   61 ANFSTDVGLR WQSTALQCLQ EAAEAFLVHL FEDTNLCAIH AKRVTIMQRD MQLARRIRGA 120
  121

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 45.39794 Histone H3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  4.57339366278729 bayes_pls_golite062009
  • DNA binding
    		•  4.49118409263799 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35201412176948 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • centromeric DNA binding
    		•  2.60445660474495 bayes_pls_golite062009
  • transcription factor activity
    		•  2.51581622888695 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.38228606466152 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.3574713307436 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30859203490073 bayes_pls_golite062009
  • transcription activator activity
    		•  1.25487495162413 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • protein binding
    		•  1.07873333188144 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  0.725138319268162 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.0885263144317296 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0852726470007639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle