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Protein Overview: Tf2-1, Tf2-4, Tf...

General Information:
Name(s) found: Tf2-9 / SPBC9B6.02c [Sanger Pombe]
Tf2-1 / SPAC9.04 [Sanger Pombe]
Tf2-4 / SPAC26A3.13c [Sanger Pombe]
Tf2-2 / SPAC167.08 [Sanger Pombe]
Description(s) found:
Found 35 descriptions.
SHOW ALL
  • retrotransposable element [Sanger Pombe]
  • retrotransposable element [Sanger Pombe]
  • retrotransposable element [Sanger Pombe]
  • retrotransposable element [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1333 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NASLink to PubMed article]
    cellular_component [ND]
    Biological Process: biological_process [ND]
    proteolysis [IEA]
    DNA integration [IEA]
    RNA-dependent DNA replication [IEA]
    cellular response to stress [IEPLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    RNA-directed DNA polymerase activity [IEA][RCALink to PubMed article]
    RNA binding [IEA]
    aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYANYRYMK ARAKRWRPEN LDGIQTSDEH LINLFAKILS KHVPEIGKFD PNKDVESYIS  60
   61 KLDQHFTEYP SLFPNEHTKR QYTLNHLEEL EQQFAERMFS ENGSLTWQEL LRQTGKVQGS 120
  121 NKGDRLTKTF EGFRNQLDKV QFIRKLMSKA NVDDFHTRLF ILWMLPYSLR KLKERNYWKS 180
  181 EISEIYDFLE DKRTASYGKT HKRFQLQNKN LGKESLSKKN NTTNSRNLRK TNVSRIEYSS 240
  241 NKFLNHTRKR YEMVLQAELP DFKCSIPCLI DTGAQANIIT EETVRAHKLP TRPWSKSVIY 300
  301 GGVYPNKINR KTIKLNISLN GISIKTEFLV VKKFSHPAAI SFTTLYDNNI EISSSKHTLS 360
  361 QMNKVSNIVK EPELPDIYKE FKDITAETNT EKLPKPIKGL EFEVELTQEN YRLPIRNYPL 420
  421 PPGKMQAMND EINQGLKSGI IRESKAINAC PVMFVPKKEG TLRMVVDYKP LNKYVKPNIY 480
  481 PLPLIEQLLA KIQGSTIFTK LDLKSAYHLI RVRKGDEHKL AFRCPRGVFE YLVMPYGIST 540
  541 APAHFQYFIN TILGEAKESH VVCYMDDILI HSKSESEHVK HVKDVLQKLK NANLIINQAK 600
  601 CEFHQSQVKF IGYHISEKGF TPCQENIDKV LQWKQPKNRK ELRQFLGSVN YLRKFIPKTS 660
  661 QLTHPLNNLL KKDVRWKWTP TQTQAIENIK QCLVSPPVLR HFDFSKKILL ETDASDVAVG 720
  721 AVLSQKHDDD KYYPVGYYSA KMSKAQLNYS VSDKEMLAII KSLKHWRHYL ESTIEPFKIL 780
  781 TDHRNLIGRI TNESEPENKR LARWQLFLQD FNFEINYRPG SANHIADALS RIVDETEPIP 840
  841 KDSEDNSINF VNQISITDDF KNQVVTEYTN DTKLLNLLNN EDKRVEENIQ LKDGLLINSK 900
  901 DQILLPNDTQ LTRTIIKKYH EEGKLIHPGI ELLTNIILRR FTWKGIRKQI QEYVQNCHTC 960
  961 QINKSRNHKP YGPLQPIPPS ERPWESLSMD FITALPESSG YNALFVVVDR FSKMAILVPC1020
 1021 TKSITAEQTA RMFDQRVIAY FGNPKEIIAD NDHIFTSQTW KDFAHKYNFV MKFSLPYRPQ1080
 1081 TDGQTERTNQ TVEKLLRCVC STHPNTWVDH ISLVQQSYNN AIHSATQMTP FEIVHRYSPA1140
 1141 LSPLELPSFS DKTDENSQET IQVFQTVKEH LNTNNIKMKK YFDMKIQEIE EFQPGDLVMV1200
 1201 KRTKTGFLHK SNKLAPSFAG PFYVLQKSGP NNYELDLPDS IKHMFSSTFH VSHLEKYRHN1260
 1261 SELNYATIDE SDIGTILHIL EHKNREQVLY LNVKYISNLN PSTIMSGWTT LATALQADKA1320
 1321 IVNDYIKNNN LNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] PSI-BLAST 8.0 HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
    2 View Details [127..194] PSI-BLAST 3.69897 HIV nucleocapsid
    3 View Details [195..392] PSI-BLAST 25.69897 CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
    4 View Details [393..920] PSI-BLAST 164.0 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
    5 View Details [921..1220] PSI-BLAST 68.30103 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    6 View Details [1221..1333] PSI-BLAST 3.69897 No description for 2dntA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.28448955239851 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.786413651497179 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.548058390008807 bayes_pls_golite062009
  • DNA binding
    		•  0.541861348095563 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity
    		•  0.934096653248474 bayes_pls_golite062009
  • catalytic activity
    		•  0.778715931979077 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.478344177019014 bayes_pls_golite062009
  • peptidase activity
    		•  0.476168407632189 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.403642706513097 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.403642706513097 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.229854266530628 bayes_pls_golite062009
  • binding
    		•  0.151374799700247 bayes_pls_golite062009
    4
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  1.11992657762408 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.97735803396704 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.966025256970563 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.870949824174184 bayes_pls_golite062009
  • binding
    		•  0.452590422306309 bayes_pls_golite062009
  • catalytic activity
    		•  0.282562363863898 bayes_pls_golite062009
  • transferase activity
    		•  0.280309374132814 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.164715045017202 bayes_pls_golite062009
    5
    Term Confidence Notes
  • catalytic activity
    		•  0.485910322334531 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle