Protein Overview: Tf2-1, Tf2-4, Tf...

General Information:
Name(s) found:	Tf2-9 / SPBC9B6.02c [Sanger Pombe] Tf2-1 / SPAC9.04 [Sanger Pombe] Tf2-4 / SPAC26A3.13c [Sanger Pombe] Tf2-2 / SPAC167.08 [Sanger Pombe]
Description(s) found: Found 35 descriptions. SHOW ALL	retrotransposable element [Sanger Pombe] retrotransposable element [Sanger Pombe] retrotransposable element [Sanger Pombe] retrotransposable element [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	1333 amino acids
Gene Ontology:
Cellular Component:	nucleus [NAS] cellular_component [ND]
Biological Process:	biological_process [ND] proteolysis [IEA] DNA integration [IEA] RNA-dependent DNA replication [IEA] cellular response to stress [IEP]
Molecular Function:	DNA binding [IEA] RNA-directed DNA polymerase activity [IEA][RCA] RNA binding [IEA] aspartic-type endopeptidase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYANYRYMK ARAKRWRPEN LDGIQTSDEH LINLFAKILS KHVPEIGKFD PNKDVESYIS  60
   61 KLDQHFTEYP SLFPNEHTKR QYTLNHLEEL EQQFAERMFS ENGSLTWQEL LRQTGKVQGS 120
  121 NKGDRLTKTF EGFRNQLDKV QFIRKLMSKA NVDDFHTRLF ILWMLPYSLR KLKERNYWKS 180
  181 EISEIYDFLE DKRTASYGKT HKRFQLQNKN LGKESLSKKN NTTNSRNLRK TNVSRIEYSS 240
  241 NKFLNHTRKR YEMVLQAELP DFKCSIPCLI DTGAQANIIT EETVRAHKLP TRPWSKSVIY 300
  301 GGVYPNKINR KTIKLNISLN GISIKTEFLV VKKFSHPAAI SFTTLYDNNI EISSSKHTLS 360
  361 QMNKVSNIVK EPELPDIYKE FKDITAETNT EKLPKPIKGL EFEVELTQEN YRLPIRNYPL 420
  421 PPGKMQAMND EINQGLKSGI IRESKAINAC PVMFVPKKEG TLRMVVDYKP LNKYVKPNIY 480
  481 PLPLIEQLLA KIQGSTIFTK LDLKSAYHLI RVRKGDEHKL AFRCPRGVFE YLVMPYGIST 540
  541 APAHFQYFIN TILGEAKESH VVCYMDDILI HSKSESEHVK HVKDVLQKLK NANLIINQAK 600
  601 CEFHQSQVKF IGYHISEKGF TPCQENIDKV LQWKQPKNRK ELRQFLGSVN YLRKFIPKTS 660
  661 QLTHPLNNLL KKDVRWKWTP TQTQAIENIK QCLVSPPVLR HFDFSKKILL ETDASDVAVG 720
  721 AVLSQKHDDD KYYPVGYYSA KMSKAQLNYS VSDKEMLAII KSLKHWRHYL ESTIEPFKIL 780
  781 TDHRNLIGRI TNESEPENKR LARWQLFLQD FNFEINYRPG SANHIADALS RIVDETEPIP 840
  841 KDSEDNSINF VNQISITDDF KNQVVTEYTN DTKLLNLLNN EDKRVEENIQ LKDGLLINSK 900
  901 DQILLPNDTQ LTRTIIKKYH EEGKLIHPGI ELLTNIILRR FTWKGIRKQI QEYVQNCHTC 960
  961 QINKSRNHKP YGPLQPIPPS ERPWESLSMD FITALPESSG YNALFVVVDR FSKMAILVPC1020
 1021 TKSITAEQTA RMFDQRVIAY FGNPKEIIAD NDHIFTSQTW KDFAHKYNFV MKFSLPYRPQ1080
 1081 TDGQTERTNQ TVEKLLRCVC STHPNTWVDH ISLVQQSYNN AIHSATQMTP FEIVHRYSPA1140
 1141 LSPLELPSFS DKTDENSQET IQVFQTVKEH LNTNNIKMKK YFDMKIQEIE EFQPGDLVMV1200
 1201 KRTKTGFLHK SNKLAPSFAG PFYVLQKSGP NNYELDLPDS IKHMFSSTFH VSHLEKYRHN1260
 1261 SELNYATIDE SDIGTILHIL EHKNREQVLY LNVKYISNLN PSTIMSGWTT LATALQADKA1320
 1321 IVNDYIKNNN LNI

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
binding	1.28448955239851	bayes_pls_golite062009
transcription regulator activity	0.786413651497179	bayes_pls_golite062009
nucleic acid binding	0.548058390008807	bayes_pls_golite062009
DNA binding	0.541861348095563	bayes_pls_golite062009

No functions predicted.

Term	Confidence	Notes
hydrolase activity	0.934096653248474	bayes_pls_golite062009
catalytic activity	0.778715931979077	bayes_pls_golite062009
endopeptidase activity	0.478344177019014	bayes_pls_golite062009
peptidase activity	0.476168407632189	bayes_pls_golite062009
aspartic-type endopeptidase activity	0.403642706513097	bayes_pls_golite062009
aspartic-type peptidase activity	0.403642706513097	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.229854266530628	bayes_pls_golite062009
binding	0.151374799700247	bayes_pls_golite062009

Term	Confidence	Notes
nucleotidyltransferase activity	1.11992657762408	bayes_pls_golite062009
DNA polymerase activity	0.97735803396704	bayes_pls_golite062009
DNA-directed DNA polymerase activity	0.966025256970563	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.870949824174184	bayes_pls_golite062009
binding	0.452590422306309	bayes_pls_golite062009
catalytic activity	0.282562363863898	bayes_pls_golite062009
transferase activity	0.280309374132814	bayes_pls_golite062009
ribonuclease activity	0.164715045017202	bayes_pls_golite062009

Term	Confidence	Notes
catalytic activity	0.485910322334531	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..126]	PSI-BLAST	8.0	HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
2	View Details	[127..194]	PSI-BLAST	3.69897	HIV nucleocapsid
3	View Details	[195..392]	PSI-BLAST	25.69897	CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
4	View Details	[393..920]	PSI-BLAST	164.0	HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
5	View Details	[921..1220]	PSI-BLAST	68.30103	N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
6	View Details	[1221..1333]	PSI-BLAST	3.69897	No description for 2dntA was found.

Protein Overview: Tf2-1, Tf2-4, Tf...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: