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Protein Overview: if-PF, if-PD, if-PB

General Information:
Name(s) found: if-PF / FBpp0290568 [FlyBase]
if-PD / FBpp0290567 [FlyBase]
if-PB / FBpp0074131 [FlyBase]
Description(s) found:
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  • gi|7293280|gb|AAF48661.1| inflated, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|24642641|ref|NP_523378.2| inflated, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|12644121|sp|P12080.2|ITA2_DROME RecName: Full=Integrin alpha-PS2; AltName: Full=Position-specific antigen subunit alpha-2; AltName: Full=Protein inflated; Contains: RecName: Full=Integrin alpha-PS2 heavy chain; Contains: RecName: Full=Integrin alpha-PS [NCBI NR]
  • Integrin alpha-PS2 OS=Drosophila melanogaster GN=if PE=1 SV=2 [Swiss-Prot]
  • The gene inflated is referred to in FlyBase by the symbol Dmel\if (CG9623, FBgn0001250). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16646222..16677467. It has the cytological map location 15A5-15A7. There is experimental evidence that it has the molecular function</span>: cell adhesion molecule binding; receptor activity. There is experimental evidence that it is involved in the biological process</span>: regulation of cell shape; axon guidance; axonal defasciculation; myofibril assembly; cell adhesion; imaginal disc-derived wing morphogenesis; maintenance of epithelial integrity, open tracheal system; maintenance of protein location; muscle attachment; salivary gland morphogenesis. 80 alleles are reported. The phenotypes of these alleles are annotated with 46 unique terms, many of which group under: organ system; hypodermal muscle of larval abdomen; primordium; adult segment; embryonic nervous system; larval abdominal segment 5; adult mesothoracic segment; nervous system; larval abdominal segment; peripheral nervous system. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • >CG9623-PB translation from_gene[CG9623 if FBgn0001250] seq_release:3 mol_weight=154323 cds_boundaries:(X:16,484,488..16,511,076[-]) aa_length:1396 transcript_info:[CG9623-RB seq_release:3] gene_info:[gene symbol:if FBgn0001250 gene_boundaries:(X:16,48 [hmr_yeast5_DM3-1_pombe.fasta]
  • (P12080) Integrin alpha-PS2 precursor (Position-specific antigen 2, alpha chain) (Protein inflated) [DrosMelano7227.FASTAC.txt]
  • (AE003503) if gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG9623-PB, isoform B [Drosophila melanogaster]gi|24642641|ref|NP_523378.2| CG9623-PB [Drosophila melanogaster]gi|12644121|sp|P12080|ITA2_DROME Integrin alpha-PS2 precursor (Position-specific antigen 2, alpha chain) (Protein inflated) [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp007413 [fly-100309-contam.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp029056 [fly-100309-contam.fasta]
  • CG9623-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Integrin alpha-PS2 precursor (Position-specific antigen 2 alpha chain) (Protein inflated) [nr-271106-contam.fasta]
  • inflated CG9623-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Inflated, isoform D OS=Drosophila melanogaster GN=if PE=3 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661,FlyMine:FBpp0074131,modMine:FBpp0074131; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=REFSEQ:NP_001162777,GB_protein:ACZ95312,FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(16647498..16647587,16647668..16649497,16649555..16649798,16649870..16651148,16652547..16652621,16654364..16654412,16654981..16655042,16658518..16658644,16663886..16663983,16665598..16665728,16673884..16674089); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=REFSEQ:NP_001162778,GB_protein:ACZ95313,FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661,FlyMine:FBpp0074131,modMine:FBpp0074131; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=REFSEQ:NP_001162777,GB_protein:ACZ95312,FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=REFSEQ:NP_001162778,GB_protein:ACZ95313,FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=REFSEQ:NP_001162778,GB_protein:ACZ95313,FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661,FlyMine:FBpp0074131,modMine:FBpp0074131; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=REFSEQ:NP_001162777,GB_protein:ACZ95312,FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0074131 type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661,FlyMine:FBpp0074131,modMine:FBpp0074131; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0290567 type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=REFSEQ:NP_001162777,GB_protein:ACZ95312,FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0290568 type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=REFSEQ:NP_001162778,GB_protein:ACZ95313,FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0074131; name=if-PB; parent=FBgn0001250,FBtr0074357; dbxref=FlyBase:FBpp0074131,FlyBase_Annotation_IDs:CG9623-PB,GB_protein:AAF48661.1,REFSEQ:NP_523378,GB_protein:AAF48661,UniProt/Swiss-Prot:P12080,FlyMine:FBpp0074131,modMine:FBpp0074131; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290567; name=if-PD; parent=FBgn0001250,FBtr0301353; dbxref=REFSEQ:NP_001162777,GB_protein:ACZ95312,FlyBase:FBpp0290567,FlyBase_Annotation_IDs:CG9623-PD,UniProt/Swiss-Prot:P12080; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:complement(join(16779851..16780056,16771565..16771695,16769853..16769950,16764485..16764611,16760948..16761009,16760331..16760379,16758514..16758588,16755837..16757115,16755522..16755765,16753635..16755464,16753465..16753554)); ID=FBpp0290568; name=if-PF; parent=FBgn0001250,FBtr0301354; dbxref=REFSEQ:NP_001162778,GB_protein:ACZ95313,FlyBase:FBpp0290568,FlyBase_Annotation_IDs:CG9623-PF,UniProt/Swiss-Prot:P12080; MD5=aaabbf0be99bbb98233b4061351f45f5; length=1396; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1396 amino acids

    Gene Ontology:
    Cellular Component: contractile fiber [IDA]
    integrin complex [IEA][ISS][NAS][TAS]
    Biological Process: cell-cell adhesion [TAS]
    cell-matrix adhesion [ISS]
    regulation of cell shape [IMP]
    midgut development [TAS]
    imaginal disc-derived wing morphogenesis [IEP][IMP][TAS]
    heterophilic cell-cell adhesion [TAS]
    axon guidance [IMP]
    cell adhesion [IDA][IMP]
    salivary gland development [TAS]
    apposition of dorsal and ventral imaginal disc-derived wing surfaces [NAS]
    maintenance of epithelial integrity, open tracheal system [IGI]
    axonal defasciculation [IMP]
    tracheal outgrowth, open tracheal system [TAS]
    salivary gland morphogenesis [IGI]
    myofibril assembly [IMP]
    maintenance of protein location [IMP]
    epithelial cell migration, open tracheal system [TAS]
    cell migration [TAS]
    muscle attachment [IGI][IMP]
    Molecular Function: protein binding [TAS]
    cell adhesion molecule binding [IDA][ISS]
    receptor activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDSIHRRR MALHCPITSL ILLLIAMSAH GYNIDLPSYV RFRQSSNSMF GFSIAMHKGR  60
   61 SGFYGNQNNV SLIVGAPKFD TSRYQQGVTE AGGVFKCSLN DDDCKLVPFD SKGNNRNVDK 120
  121 EVVDRKSYQW LGATVATGRD SDLVVACAPR YVFHTMTPSR AFRIDPVGTC FTSHNFEEFY 180
  181 EVSPCRTNNW GYHRQGSCQA GFSAAINGNG SRLFIGAPGS WYWQGQTYSI PPDAKFPFKP 240
  241 PLYQPFGTGG MASSHDVTRP ENQVFSTSES ASVNDDSYLG YSMVTGDFDG DRSEDVAIGM 300
  301 PRGGNLVGRI VVNRWNMANI FNITGRQIGE YFGYSLATSD VDGDGLDDLL IGAPMYTDPD 360
  361 NVEGKYDVGR VYILLQGGPT EEKRWTTEHI RDGYHSKGRF GLALTTLGDV NGDGYGDFAV 420
  421 GAPYDGPEGR GVVYIFHGSP MGPLAKPSQI IKSEQLVEGA PYPRTFGFAL SGGLDMDGNT 480
  481 YPDLAVGAYS SDQVFIFKSR PVAAVNAETS FASNSKLISL DDRSCQLVRD HKKVPCMLLT 540
  541 TCWSYTGRYL PEQLDFDVSW LLDAKKLLNP RMFFLRDEGK NIRNQTIRLN YGQKYCLNET 600
  601 VYLLDKVQDK LTPLEVEARY NLRSSRPLDP MVRHRRSILE PVIDQNREIV LRDAINIQKN 660
  661 CGPDNICEPD LKLKVSTVDK YLFGSPEPLV IEVFISNTNE DAFEAAFYMV TPPDLQFRKL 720
  721 QQLGEKKDTP ITCSPPTPEN NHTLKCDIGN PLESGKIAHF KISLVPEEKY GSSSSYDFYW 780
  781 EANSTNLEKP GSEYDNKIRQ SVGIWVDTDL DIKGTSLPDY QLYKADDYKE LENATKEDDI 840
  841 GPQVVHIYEI RNNRPSIIEE AEVFIHLPYE TIVGDPLMYL LNQPETGGKI QCDDVAFNEY 900
  901 NLLLDEKLVK KSYLQAQGAI WNSAQVSGQS SSSSSSGGAS VHIEKARGEG FVRGVLVSNS 960
  961 TDAGDKLSPK QVEQRRQEDT LEALGDASFV HRDRASQAVQ EPQVNQTSFT TYSTSSSSSG1020
 1021 SGAPSAQLRG HSTQGHIQMA GPVQHTSSSS SSNYRSWPAQ QQQQHQQLLL AGSGGSGLGS1080
 1081 PVTFNDKSQF GGRNNNFHTG TLDLGTLNRG NVDNELYRSQ GQYQNPSQSL GQSQGQFQAN1140
 1141 ANQGHYQGQN QAQFQARNPG FQGQTSYQGQ TQYSGQPGGY QTHHVTYSSG SKPYYGRENE1200
 1201 DFYDEDNLQQ ATPGHWSSSS SSSSSSGTRR LRRSNDKDGA TEKPLQIDLN SPCQSARCKS1260
 1261 IRCVVTNLGT EDGDAAFVAI RARMVAKTME KLASNVPLNV STLAVANVTL LPFIGAPKDA1320
 1321 IVKTHEIFYK AEPEPLQVPD VVPLWVVVLA ACAGALIFLL LVWLLYKCGF FNRNRPTDHS1380
 1381 QERQPLRNGY HGDEHL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1021] PSI-BLAST 1000.0 Thigh, calf-1 and calf-2 domains of integrin alpha; Integrin alpha N-terminal domain
    2 View Details [1022..1238] PSI-BLAST 3.522879 Sec24
    3 View Details [1239..1396] FFAS03 0.977 Class I MHC, alpha-3 domain; Class I MHC, alpha-1 and alpha-2 domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • fibronectin binding
    		•  4.47872047963661 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  4.38909417354069 bayes_pls_golite062009
  • receptor activity
    		•  3.07436728891089 bayes_pls_golite062009
  • protein binding
    		•  2.93314130654223 bayes_pls_golite062009
  • binding
    		•  2.59561200514645 bayes_pls_golite062009
  • signal transducer activity
    		•  2.30570215634503 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.30570215634503 bayes_pls_golite062009
  • extracellular matrix binding
    		•  2.29992000538847 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.89652634417708 bayes_pls_golite062009
  • integrin binding
    		•  1.46467851042106 bayes_pls_golite062009
  • laminin receptor activity
    		•  0.57752974249266 bayes_pls_golite062009
  • protein complex binding
    		•  0.317709418149211 bayes_pls_golite062009
  • receptor binding
    		•  0.272415627526009 bayes_pls_golite062009
  • laminin binding
    		•  0.0766626920324303 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • antigen binding
    		•  4.89104621080784 bayes_pls_golite062009
  • fibroblast growth factor 1 binding
    		•  4.83393122648015 bayes_pls_golite062009
  • fibroblast growth factor binding
    		•  4.13221304795838 bayes_pls_golite062009
  • structural constituent of muscle
    		•  3.98121810547254 bayes_pls_golite062009
  • receptor activity
    		•  3.78371608192659 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  3.61499901154788 bayes_pls_golite062009
  • telethonin binding
    		•  3.52570776607637 bayes_pls_golite062009
  • peptide antigen binding
    		•  3.28664673817342 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.96430858354065 bayes_pls_golite062009
  • signal transducer activity
    		•  2.96430858354065 bayes_pls_golite062009
  • alpha-actinin binding
    		•  2.67491975848485 bayes_pls_golite062009
  • binding
    		•  2.63017203838224 bayes_pls_golite062009
  • IgG binding
    		•  2.26957915383282 bayes_pls_golite062009
  • protein binding
    		•  2.15886049700791 bayes_pls_golite062009
  • collagen binding
    		•  1.74319155625942 bayes_pls_golite062009
  • fibroblast growth factor receptor activity
    		•  1.56441561552059 bayes_pls_golite062009
  • growth factor binding
    		•  1.44764549069607 bayes_pls_golite062009
  • actinin binding
    		•  1.26063584275039 bayes_pls_golite062009
  • titin binding
    		•  1.2556004094702 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  1.24665876791142 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.16640765151826 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.12623949815036 bayes_pls_golite062009
  • DNA binding
    		•  1.03436125942615 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  0.999215596624734 bayes_pls_golite062009
  • platelet-derived growth factor receptor binding
    		•  0.857730607611705 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.713553545319665 bayes_pls_golite062009
  • protein complex binding
    		•  0.673081763675386 bayes_pls_golite062009
  • peptide binding
    		•  0.586594309208949 bayes_pls_golite062009
  • receptor binding
    		•  0.560378932994877 bayes_pls_golite062009
  • actin binding
    		•  0.545061127004865 bayes_pls_golite062009
  • cytokine binding
    		•  0.53642273063973 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.493337433108544 bayes_pls_golite062009
  • integrin binding
    		•  0.474366116240879 bayes_pls_golite062009
  • transcription factor activity
    		•  0.381018527511007 bayes_pls_golite062009
  • transmembrane receptor protein kinase activity
    		•  0.354608384253329 bayes_pls_golite062009
  • IgG receptor activity
    		•  0.222547258091264 bayes_pls_golite062009
  • immunoglobulin receptor activity
    		•  0.196764162512115 bayes_pls_golite062009
  • cytokine receptor activity
    		•  0.196568580818805 bayes_pls_golite062009
  • transmembrane receptor protein tyrosine kinase activity
    		•  0.172900245768318 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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