| Protein: | if-PF, if-PD, if-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1396 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for if-PF, if-PD, if-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1087.0 | [0..1] | [1396..1] |
|
Region A: Residues: [1-1021] |
1 11 21 31 41 51
| | | | | |
1 MSGDSIHRRR MALHCPITSL ILLLIAMSAH GYNIDLPSYV RFRQSSNSMF GFSIAMHKGR 60
61 SGFYGNQNNV SLIVGAPKFD TSRYQQGVTE AGGVFKCSLN DDDCKLVPFD SKGNNRNVDK 120
121 EVVDRKSYQW LGATVATGRD SDLVVACAPR YVFHTMTPSR AFRIDPVGTC FTSHNFEEFY 180
181 EVSPCRTNNW GYHRQGSCQA GFSAAINGNG SRLFIGAPGS WYWQGQTYSI PPDAKFPFKP 240
241 PLYQPFGTGG MASSHDVTRP ENQVFSTSES ASVNDDSYLG YSMVTGDFDG DRSEDVAIGM 300
301 PRGGNLVGRI VVNRWNMANI FNITGRQIGE YFGYSLATSD VDGDGLDDLL IGAPMYTDPD 360
361 NVEGKYDVGR VYILLQGGPT EEKRWTTEHI RDGYHSKGRF GLALTTLGDV NGDGYGDFAV 420
421 GAPYDGPEGR GVVYIFHGSP MGPLAKPSQI IKSEQLVEGA PYPRTFGFAL SGGLDMDGNT 480
481 YPDLAVGAYS SDQVFIFKSR PVAAVNAETS FASNSKLISL DDRSCQLVRD HKKVPCMLLT 540
541 TCWSYTGRYL PEQLDFDVSW LLDAKKLLNP RMFFLRDEGK NIRNQTIRLN YGQKYCLNET 600
601 VYLLDKVQDK LTPLEVEARY NLRSSRPLDP MVRHRRSILE PVIDQNREIV LRDAINIQKN 660
661 CGPDNICEPD LKLKVSTVDK YLFGSPEPLV IEVFISNTNE DAFEAAFYMV TPPDLQFRKL 720
721 QQLGEKKDTP ITCSPPTPEN NHTLKCDIGN PLESGKIAHF KISLVPEEKY GSSSSYDFYW 780
781 EANSTNLEKP GSEYDNKIRQ SVGIWVDTDL DIKGTSLPDY QLYKADDYKE LENATKEDDI 840
841 GPQVVHIYEI RNNRPSIIEE AEVFIHLPYE TIVGDPLMYL LNQPETGGKI QCDDVAFNEY 900
901 NLLLDEKLVK KSYLQAQGAI WNSAQVSGQS SSSSSSGGAS VHIEKARGEG FVRGVLVSNS 960
961 TDAGDKLSPK QVEQRRQEDT LEALGDASFV HRDRASQAVQ EPQVNQTSFT TYSTSSSSSG1020
1021 S
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1jv2A |
| Description: | Thigh, calf-1 and calf-2 domains of integrin alpha; Integrin alpha N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| fibronectin binding | 4.47872047963661 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 4.38909417354069 | bayes_pls_golite062009 |
| receptor activity | 3.07436728891089 | bayes_pls_golite062009 |
| protein binding | 2.93314130654223 | bayes_pls_golite062009 |
| binding | 2.59561200514645 | bayes_pls_golite062009 |
| signal transducer activity | 2.30570215634503 | bayes_pls_golite062009 |
| molecular transducer activity | 2.30570215634503 | bayes_pls_golite062009 |
| extracellular matrix binding | 2.29992000538847 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.89652634417708 | bayes_pls_golite062009 |
| integrin binding | 1.46467851042106 | bayes_pls_golite062009 |
| laminin receptor activity | 0.57752974249266 | bayes_pls_golite062009 |
| protein complex binding | 0.317709418149211 | bayes_pls_golite062009 |
| receptor binding | 0.272415627526009 | bayes_pls_golite062009 |
| laminin binding | 0.0766626920324303 | bayes_pls_golite062009 |
|
Region A: Residues: [1022-1238] |
1 11 21 31 41 51
| | | | | |
1 GAPSAQLRGH STQGHIQMAG PVQHTSSSSS SNYRSWPAQQ QQQHQQLLLA GSGGSGLGSP 60
61 VTFNDKSQFG GRNNNFHTGT LDLGTLNRGN VDNELYRSQG QYQNPSQSLG QSQGQFQANA 120
121 NQGHYQGQNQ AQFQARNPGF QGQTSYQGQT QYSGQPGGYQ THHVTYSSGS KPYYGRENED 180
181 FYDEDNLQQA TPGHWSSSSS SSSSSGTRRL RRSNDKD
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1239-1396] |
1 11 21 31 41 51
| | | | | |
1 GATEKPLQID LNSPCQSARC KSIRCVVTNL GTEDGDAAFV AIRARMVAKT MEKLASNVPL 60
61 NVSTLAVANV TLLPFIGAPK DAIVKTHEIF YKAEPEPLQV PDVVPLWVVV LAACAGALIF 120
121 LLLVWLLYKC GFFNRNRPTD HSQERQPLRN GYHGDEHL
|
| Detection Method: | |
| Confidence: | 0.977 |
| Match: | 1biiA |
| Description: | Class I MHC, alpha-3 domain; Class I MHC, alpha-1 and alpha-2 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| antigen binding | 4.89104621080784 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 4.83393122648015 | bayes_pls_golite062009 |
| fibroblast growth factor binding | 4.13221304795838 | bayes_pls_golite062009 |
| structural constituent of muscle | 3.98121810547254 | bayes_pls_golite062009 |
| receptor activity | 3.78371608192659 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.61499901154788 | bayes_pls_golite062009 |
| telethonin binding | 3.52570776607637 | bayes_pls_golite062009 |
| peptide antigen binding | 3.28664673817342 | bayes_pls_golite062009 |
| molecular transducer activity | 2.96430858354065 | bayes_pls_golite062009 |
| signal transducer activity | 2.96430858354065 | bayes_pls_golite062009 |
| alpha-actinin binding | 2.67491975848485 | bayes_pls_golite062009 |
| binding | 2.63017203838224 | bayes_pls_golite062009 |
| IgG binding | 2.26957915383282 | bayes_pls_golite062009 |
| protein binding | 2.15886049700791 | bayes_pls_golite062009 |
| collagen binding | 1.74319155625942 | bayes_pls_golite062009 |
| fibroblast growth factor receptor activity | 1.56441561552059 | bayes_pls_golite062009 |
| growth factor binding | 1.44764549069607 | bayes_pls_golite062009 |
| actinin binding | 1.26063584275039 | bayes_pls_golite062009 |
| titin binding | 1.2556004094702 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.24665876791142 | bayes_pls_golite062009 |
| nucleic acid binding | 1.16640765151826 | bayes_pls_golite062009 |
| transcription regulator activity | 1.12623949815036 | bayes_pls_golite062009 |
| DNA binding | 1.03436125942615 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.999215596624734 | bayes_pls_golite062009 |
| platelet-derived growth factor receptor binding | 0.857730607611705 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.713553545319665 | bayes_pls_golite062009 |
| protein complex binding | 0.673081763675386 | bayes_pls_golite062009 |
| peptide binding | 0.586594309208949 | bayes_pls_golite062009 |
| receptor binding | 0.560378932994877 | bayes_pls_golite062009 |
| actin binding | 0.545061127004865 | bayes_pls_golite062009 |
| cytokine binding | 0.53642273063973 | bayes_pls_golite062009 |
| transcription repressor activity | 0.493337433108544 | bayes_pls_golite062009 |
| integrin binding | 0.474366116240879 | bayes_pls_golite062009 |
| transcription factor activity | 0.381018527511007 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.354608384253329 | bayes_pls_golite062009 |
| IgG receptor activity | 0.222547258091264 | bayes_pls_golite062009 |
| immunoglobulin receptor activity | 0.196764162512115 | bayes_pls_golite062009 |
| cytokine receptor activity | 0.196568580818805 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.172900245768318 | bayes_pls_golite062009 |
