Protein Overview: YPL199C

General Information:
Name(s) found:	YPL199C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|74583773\|sp\|Q08954.1\|YP199_YEAST RecName: Full=Smr domain-containing protein YPL199C [NCBI NR] gi\|6325057\|ref\|NP_015125.1\| hypothetical protein; Ypl199cp [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S65218 hypothetical protein YPL199c - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1370414\|emb\|CAA97913.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae GN=YPL199C PE=1 SV=1 [Swiss-Prot] Protein of unknown function localised to cytoplasm [mips] Putative protein of unknown function, predicted to be palmitoylated [SGD] >Q08954 (Q08954) Chromosome XVI reading frame ORF YPL199C [4932.FASTACCERV.txt] Chr XVI from 172754-172032, reverse complement [hmr_yeast5_DM3-1_pombe.fasta] Chr XVI from 172032-172754, reverse complement [yeastorf3.fasta] YPL199C, Chr XVI from 172032-172754, reverse complement [yeast_orfs2] YPL199C SGDID:S0006120, Chr XVI from 172754-172032, reverse complement, Uncharacterized ORF [yeastflysequest.fasta] Ypl199cp [Saccharomyces cerevisiae]gi\|1370414\|emb\|CAA97913.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|2132229\|pir\|\|S65218 hypothetical protein YPL199c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas] (Q08954) S.cerevisiae chromosome XVI reading frame ORF YPL199c [cerv4932.FASTAC] YPL199C SGDID:S000006120, Chr XVI from 172754-172032, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YPL199C SGDID:S000006120, Chr XVI from 172754-172032, reverse complement, Uncharacterized ORF, "Putative protein of unknown function, predicted to be palmitoylated" [yeast-200209-contam.fasta] Uncharacterized protein YPL199C [nr-271106-contam.fasta] hypothetical protein; Ypl199cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YPL199C SGDID:S000006120, Chr XVI from 172755-172033, Genome Release 64-1-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function, predicted to be palmitoylated" [yeast-030211-contam.fasta] YPL199C SGDID:S000006120, Chr XVI from 172755-172033, Genome Release 64-2-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; predicted to be palmitoylated" [20141208_orf_trans.fasta]
Organism:	Saccharomyces cerevisiae
Length:	240 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGTGGVVVG TQNPVRDYNH STDEEYQRLR RLADEAYKKR DQLSHESQTA YQQGDKKLAH  60
   61 ELSEKSKAQL KTAEDFNMQA AEYVFVENNA DSSSNEIDLH GLYVKEALFI LQKRIKFAID 120
  121 HNEPQLNVIV GKGLHSQNGI AKLKPSIEEF CAKHGIRNHL EKGNSGVLVL ELQGVQMQMD 180
  181 GPAVNAPTNQ YNAQPHPQYN NNGGQPQGQA QNYNNSGNDN KDSTLTSIFK IFCNCIQSLA 240
  241

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Krogan NJ, et al. (2006)		APD1 OXP1 SPC98 YPL199C
View Details	Qiu et al. (2008)		AST2 ATG27 HMS2 MNL1 NAT3 REH1 RIA1 RPL11B RPL12B, RPL12A RPL13A RPL13B RPL14A RPL16A RPL17A RPL17B RPL19B, RPL19A RPL1A, RPL1B RPL20A RPL20B RPL21A RPL21B RPL22A RPL24A RPL24B RPL27B RPL29 RPL2A, RPL2B RPL31B RPL33B RPL34A RPL35A, RPL35B RPL36B RPL37A RPL38 RPL39 RPL40B, RPL40A RPL41A, RPL41B RPL42B, RPL42A RPL5 RPL6A RPL6B RPL8A RPL9A RPL9B RPP2A RPS0A RPS0B RPS10B RPS11A, RPS11B RPS16B, RPS16A RPS17A RPS18B, RPS18A RPS19B RPS1A RPS2 RPS21B RPS23B, RPS23A RPS24A, RPS24B RPS26A RPS27B RPS29A RPS29B RPS30B, RPS30A RPS4B, RPS4A RPS6A, RPS6B RPS7B RPS8B, RPS8A RPS9B TOS4 TSR1 VMA6 YGR117C YPL199C

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	SOG2	YPL199C	2	Unpublished Fields Lab Data
View Screen	LSM8	YPL199C	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YPL199C	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..92]	deduced	N/A	Confident ab initio structure predictions are available.
2	View Details	[93..240]	Pfam	27.769551	Smr domain No confident structure predictions are available.

Functions predicted (by domain):

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
binding	0.780949548591104	bayes_pls_golite062009
protein binding	0.245678926103876	bayes_pls_golite062009

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2