Protein Overview: YOR352W

General Information:
Name(s) found:	YOR352W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|74583751\|sp\|Q08816.1\|YO352_YEAST RecName: Full=Uncharacterized protein YOR352W [NCBI NR] gi\|6324928\|ref\|NP_014997.1\| Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; Yor352wp [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S67264 probable membrane protein YOR352w - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1420766\|emb\|CAA99681.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Uncharacterized protein YOR352W OS=Saccharomyces cerevisiae GN=YOR352W PE=1 SV=1 [Swiss-Prot] Protein of unknown function localised to cytoplasm and nucleus [mips] Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus [SGD] >Q08816 (Q08816) Chromosome XV reading frame ORF YOR352W [4932.FASTACCERV.txt] Chr XV from 997206-998237 [hmr_yeast5_DM3-1_pombe.fasta] Chr XV from 997205-998236 [yeastorf3.fasta] YOR352W, Chr XV from 997205-998236 [yeast_orfs2] YOR352W SGDID:S0005879, Chr XV from 997208-998239, Uncharacterized ORF [yeastflysequest.fasta] Yor352wp [Saccharomyces cerevisiae]gi\|1420766\|emb\|CAA99681.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|2132953\|pir\|\|S67264 probable membrane protein YOR352w - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas] (Q08816) S.cerevisiae chromosome XV reading frame ORF YOR352w [cerv4932.FASTAC] YOR352W SGDID:S000005879, Chr XV from 997208-998239, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YOR352W SGDID:S000005879, Chr XV from 997210-998241, Uncharacterized ORF, "Hypothetical protein" [yeast-contam.fasta] YOR352W SGDID:S000005879, Chr XV from 997210-998241, Uncharacterized ORF, "Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Uncharacterized protein YOR352W [nr-271106-contam.fasta] hypothetical protein; Yor352wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Uncharacterized protein YOR352W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR352W PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YOR352W SGDID:S000005879, Chr XV from 997213-998244, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus" [yeast-030211-contam.fasta] TFB6 SGDID:S000005879, Chr XV from 997213-998244, Genome Release 64-2-1, Verified ORF, "Subunit of TFIIH complex; facilities dissociation of the Ssl2p helices from TFIIH; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus" [20141208_orf_trans.fasta] TR4617\|c0_g1_i1\|g.3281 ORF TR4617\|c0_g1_i1\|g.3281 TR4617\|c0_g1_i1\|m.3281 type:complete len:344 (+) TR4617\|c0_g1_i1:587-1618(+) [Y12_S_cerevisiae-Sep2015-contam.fasta] TR8647\|c0_g1_i1\|g.6118 ORF TR8647\|c0_g1_i1\|g.6118 TR8647\|c0_g1_i1\|m.6118 type:complete len:344 (+) TR8647\|c0_g1_i1:145-1176(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta] asmbl_2469\|g.1678 ORF asmbl_2469\|g.1678 asmbl_2469\|m.1678 type:complete len:344 (+) asmbl_2469:145-1176(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta] asmbl_2588\|g.2067 ORF asmbl_2588\|g.2067 asmbl_2588\|m.2067 type:complete len:344 (+) asmbl_2588:587-1618(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta] ID=asmbl_2473\|g.1814 ORF ID=asmbl_2473\|g.1814 ID=asmbl_2473\|m.1814 type:complete len:344 (+) ID=asmbl_2473:145-1176(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta] ID=asmbl_2591\|g.1811 ORF ID=asmbl_2591\|g.1811 ID=asmbl_2591\|m.1811 type:complete len:344 (+) ID=asmbl_2591:587-1618(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	343 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytoplasm [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPNTPLHA QPNEQLDLNN LNDLDEKDID DLNLDPNSDV EISADSGDVV NSNIDNVIWQ  60
   61 RNCNKKRRYH TPEFNDVYNE TNNTINDVTM LDDVDDFQPR INVSSPFSSA TKLSELLPND 120
  121 HNGTSHPRRL SMSQQSKFIS YVDDQLLQIQ RKFVQSRGLN IKNGYASLTP LLQDLKTLVD 180
  181 FVWYSIAHVP NSDYLLQSEE KRHCPDSRNP KDTCGYSSYF GQGSYLIKIA DDLIDYVEKF 240
  241 TFKNMEDSEI NDTLSKLFKL FFILDRIFVI LTDDNDNCKE VPKTSSASKN IAGLNGTDIV 300
  301 RLKGIAERTR VRLPIFLESQ GIHGYHYELS KIYEGFLDHA NSF

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Krogan NJ, et al. (2006)		GDH2 MMS21 NSE3 NSE4 SMC5 YOR352W
View Details	Gavin AC, et al. (2006)		GLN4 SSL2 YOR352W

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	CEP3	sample cbf3 from feb 2005	Sandall S, et all (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	PAU5	YOR352W	1	Unpublished Fields Lab Data
View Screen	GPI16	YOR352W	1	Unpublished Fields Lab Data
View Screen	PEX1	YOR352W	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YOR352W	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..343]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2