Protein Overview: YNL054W-B

General Information:
Name(s) found:	YNL054W-B [SGD]
Description(s) found: Found 23 descriptions. SHOW ALL	TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition [SGD]
Organism:	Saccharomyces cerevisiae
Length:	1749 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	DNA-directed DNA polymerase activity [ISS] RNA-directed DNA polymerase activity [ISS] RNA binding [ISS] protein binding [ISS] ribonuclease activity [ISS] peptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSD WSFYGRPSMI PYTPYQMSPM 120
  121 YFPPGPHSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FLNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLHLGQKLT ESTVNHTNHS DDELPGHLLL DSGASRTLIR SAHHIHSASS 480
  481 NPDINVVDAQ KRNIPINAIG DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC 540
  541 FTKNVLERSD GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR 600
  601 MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH IKGSRLKYQN 660
  661 SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV YPLHDRREDS ILDVFTTILA 720
  721 FIKNQFQASV LVIQMDRGSE YTNRTLHKFL EKNGITPCYT TTADSRAHGV AERLNRTLLD 780
  781 DCRTQLQCSG LPNHLWFSAI EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV 840
  841 IVNDHNPNSK IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN 900
  901 YDALTFDEDL NRLTASYQSF IASNEIQQSD DLNFQSDIEL HPEQPRNVLS KAVSPTDSTP 960
  961 PSTHTEDSKR VSKTNIRAPR EVDPNISKSD ILPSKKRSST PQISDIESTG SGGMHRLDVP1020
 1021 LLAPMSQSNT HESSHTSKSK DFRHSDSYSD NETNHTNVPI SSTGGTNNKT VPQTSEQETE1080
 1081 KRIIHRSPSI DTSSSESNSL HHVVPIKTSD TCPKENTEES IIADLPLPDL PPEPPTKLSD1140
 1141 SFKELPPINS RQTNSSLGGI GDSNAYTTIN SKKRSLEDNE TEIKVSRDTW NTKNMRSLEP1200
 1201 PRSKKRIHLI AAVKAVKSIK PIRTTLRYDE AITYNKDIKE KEKYIEAYHK EVNQLLKMKT1260
 1261 WDTDKYYDRK EIDPKRVINS MFIFNRKRDG THKARFVARG DIQHPDTYDS GMQSNTVHHY1320
 1321 ALMTSLSLAL DNNYYITQLD ISSAYLYADI KEELYIRPPP HLGMNDKLIR LKKSLYGLKQ1380
 1381 SGANWYETIK SYLIEQCDME EVRGWSCVFK NSQVTICLFV DDMILFSKDL NANKKIITTL1440
 1441 KKQYDTKIIN LGESDNEIQY DILGLEIKYQ RSKYMKLGME KSLTEKLPKL NVHLNPKGKK1500
 1501 LSAPGQPGLY IDQDELEIDE DEYKEKVHEM QKLIGLASYV GYKFRFDLLY YINTLAQHIL1560
 1561 FPSRQVLDMT YELIQFMWDT RDKQLIWHKN KPTKPDNKLV AISDASYGNQ PYYKSQIGNI1620
 1621 FLLNGKVIGG KSTKASLTCT STTEAEIHAV SEAIPLLNNL SHLVQELNKK PIIKGLLTDS1680
 1681 RSTISIIKST NEEKFRNRFF GTKAMRLRDE VSGNNLYVYY IETKKNIADV MTKPLPIKTF1740
 1741 KLLTNKWIH

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		YCL019W YDR210C-C YDR210C-D YDR365W-B YFL002W-A, YGR161W-B YGR038C-B YHL009W-B YJL113W YJR027W YJR029W YMR050C YNL054W-B YNL284C-B YOL103W-B YOR192C-B YOR343W-B

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	ZDS1	Sample 2- cpn2 from june 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Protein Overview: YNL054W-B

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: