Protein Overview: YHL009W-B

General Information:
Name(s) found:	YHL009W-B [SGD]
Description(s) found: Found 21 descriptions. SHOW ALL	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD]
Organism:	Saccharomyces cerevisiae
Length:	1802 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	DNA-directed DNA polymerase activity [ISS] RNA-directed DNA polymerase activity [ISS] RNA binding [ISS] protein binding [ISS] ribonuclease activity [ISS] peptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT  60
   61 ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
  121 HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTNNVENIPI LLNNFKKFIK KYQFDDVFEN 180
  181 DIIEIDPREN EILCKIIKEG LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE 240
  241 KVLVDTTCRN SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK 300
  301 QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC SINCKKKPNR 360
  361 ELGLTRPISQ KPIIYKVHRD NNNLSPVQNE QKSWNKTQKK SNKVYNSKKL VIIDTGSGVN 420
  421 ITNDKTLLHN YEDSNRSTRF FGIGKNSSVS VKGYGYIKIK NGHNNTDNKC LLTYYVPEEE 480
  481 STIISCYDLA KKTKMVLSRK YTRLGNKIIK IKTKIVNGVI HVKMNELIER PSDDSKINAI 540
  541 KPTSSPGFKL NKRSITLEDA HKRMGHTGIQ QIENSIKHNH YEESLDLIKE PNEFWCQTCK 600
  601 ISKATKRNHY TGSMNNHSTD HEPGSSWCMD IFGPVSSSNA DTKRYMLIMV DNNTRYCMTS 660
  661 THFNKNAETI LAQIRKNIQY VETQFDRKVR EINSDRGTEF TNDQIEEYFI SKGIHHILTS 720
  721 TQDHAANGRA ERYIRTIVTD ATTLLRQSNL RVKFWEYAVT SATNIRNCLE HKSTGKLPLK 780
  781 AISRQPVTVR LMSFLPFGEK GIIWNHNHKK LKPSGLPSII LCKDPNSYGY KFFIPSKNKI 840
  841 VTSDNYTIPN YTMDGRVRNT QNIYKSHQFS SHNDNEEDQI ETVTNLCEAL ENYEDDNKPI 900
  901 TRLEDLFTEE ELSQIDSNAK YPSPSNNLEG DLDYVFSDVE ESGDYDVESE LSTTNTSIST 960
  961 DKNKILSNKD FNSELASTEI SISEIDKKGL INTSHIDEDK YDEKVHRIPS IIQEKLVGSK1020
 1021 NTIKINDENR ISDRIRSKNI GSILNTGLSR CVDITDESIT NKDESMHNAK PELIQEQFNK1080
 1081 TNHETSFPKE GSIGTNVKFR NTDNEISLKT GDTSLPIKTL ESINNHHSND YSTNKVEKFE1140
 1141 KENHHPPPIE DIVDMSDQTD MESNCQDGNN LKELKVTDKN VPTDNGTNVS PRLEQNIEAS1200
 1201 GSPVQTVNKS AFLNKEFSSL NMKRKRKRHD KNNSLTSYEL ERDKKRSKRN RVKLIPDNME1260
 1261 TVSAQKIRAI YYNEAISKNP DLKEKHEYKQ AYHKELQNLK DMKVFDVDVK YSRSEIPDNL1320
 1321 IVPTNTIFTK KRNGIYKARI VCRGDTQSPD TYSVITTESL NHNHIKIFLM IANNRNMFMK1380
 1381 TLDINHAFLY AKLEEEIYIP HPHDRRCVVK LNKALYGLKQ SPKEWNDHLR QYLNGIGLKD1440
 1441 NSYTPGLYQT EDKNLMIAVY VDDCVIAASN EQRLDEFINK LKSNFELKIT GTLIDDVLDT1500
 1501 DILGMDLVYN KRLGTIDLTL KSFINRMDKK YNEELKKIRK SSIPHMSTYK IDPKKDVLQM1560
 1561 SEEEFRQGVL KLQQLLGELN YVRHKCRYDI NFAVKKVARL VNYPHERVFY MIYKIIQYLV1620
 1621 RYKDIGIHYD RDCNKDKKVI AITDASVGSE YDAQSRIGVI LWYGMNIFNV YSNKSTNRCV1680
 1681 SSTEAELHAI YEGYADSETL KVTLKELGEG DNNDIVMITD SKPAIQGLNR SYQQPKEKFT1740
 1741 WIKTEIIKEK IKEKSIKLLK ITGKGNIADL LTKPVSASDF KRFIQVLKNK ITSQDILAST1800
 1801 DY

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Krogan NJ, et al. (2006)		ABF1 SRL2 YHL009W-B
View Details	Qiu et al. (2008)		YDR210C-C YDR210C-D YDR210W-B YFL002W-A, YGR161W-B YGR027W-B YHL009W-B YLR157C-B YLR227W-B YNL054W-B YNL284C-B YOL103W-B YOR192C-B YOR343W-A YOR343W-B

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	RLF2	identification data - first search in cascade	Green EM, et al (2005)
View Run	MLP2	#03 Alpha Factor Prep1-TiO2 Flowthrough	Keck JM, et al. (2011)
View Run	MLP2	#29 Asynchronous Prep5-TiO2 Flowthrough	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: YHL009W-B

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: