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Protein Overview: YNL040W

General Information:
Name(s) found: YNL040W [SGD]
Description(s) found:
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  • gi|6324288|ref|NP_014358.1| Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene; Ynl040wp [Saccha [NCBI NR]
  • pir||S62962 hypothetical protein YNL040w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1730724|sp|P53960.1|YNE0_YEAST RecName: Full=Uncharacterized protein YNL040W [NCBI NR]
  • gi|1301892|emb|CAA95907.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Putative alanyl-tRNA editing protein alaX OS=Saccharomyces cerevisiae GN=YNL040W PE=1 SV=1 [Swiss-Prot]
  • Protein of unknown function localised to cytoplasm [mips]
  • Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene [SGD]
  • YNL040W, Chr XIV from 553376-554746 [yeast_orfs2]
  • Chr XIV from 553376-554746 [yeastorf3.fasta]
  • (P53960) Hypothetical 51.0 kDa protein in YIP3-TFC5 intergenic region [4932.FASTACCERV.txt]
  • YNL040W SGDID:S0004985, Chr XIV from 553378-554748, Uncharacterized ORF [yeastflysequest.fasta]
  • YNL040W SGDID:S0004985, Chr XIV from 553379-554749, Uncharacterized ORF [10112005cervSGD.fasta]
  • Ynl040wp [Saccharomyces cerevisiae]gi|1301892|emb|CAA95907.1| unnamed protein product [Saccharomyces cerevisiae]gi|2131872|pir||S62962 hypothetical protein YNL040w - yeast (Saccharomyces cerevisiae)gi|1730724|sp|P53960|YNE0_YEAST Hypothetical 51.0 kDa [nrdb_11152004_Chlamydomonas]
  • YNL040W SGDID:S000004985, Chr XIV from 553381-554751, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553381-554751, Uncharacterized ORF, "Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YN [yeast-contam.fasta]
  • Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene; Ynl040wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Uncharacterized protein YNL040W [nr-271106-contam.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553382-554752, Uncharacterized ORF, "Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YN [SGD_S-cerevisiae_na_01-05-2010_reversed.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553381-554751, Uncharacterized ORF, "Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553382-554752, Uncharacterized ORF, "Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene" [SGDyeast.20101221.fasta]
  • Putative alanyl-tRNA editing protein alaX OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL040W PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553380-554750, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene" [yeast-030211-contam.fasta]
  • YNL040W SGDID:S000004985, Chr XIV from 553380-554750, Genome Release 64-2-1, Verified ORF, "Putative protein of unknown function; has strong similarity to alanyl-tRNA synthases from Eubacteria; null mutant displays decreased translation rate and increased readthrough of premature stop codons; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene" [20141208_orf_trans.fasta]
  • TR5269|c0_g1_i1|g.3643 ORF TR5269|c0_g1_i1|g.3643 TR5269|c0_g1_i1|m.3643 type:complete len:457 (+) TR5269|c0_g1_i1:1159-2529(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • ID=asmbl_5966|g.3788 ORF ID=asmbl_5966|g.3788 ID=asmbl_5966|m.3788 type:complete len:457 (+) ID=asmbl_5966:1158-2528(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed articleLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPMTPVKV GALACQRNSF LFDGFKTLVV SCEPTKNKKG EIEGYEIELQ DTILFPEGGG  60
   61 QPSDSGFLKI VEGNRNSSKI EKILVSHVSR FGLHAKHHVN DYIEPGTTVE VAVDEQKRMD 120
  121 YMQQHTGQHL LSAILERNYK VDTVSWSMGG IITKKKPVLE PSDYFNYIEL NRKLTLDEIT 180
  181 NVSDEINQLI INFPQEIIVE ERIGEETVDE VSTSKIPDDY DLSKGVLRTI HIGDIDSNPC 240
  241 CGTHLKCTSQ IGSILILSNQ SAVRGSNSRL YFMCGKRVSL YAKSVNKILL DSKNLLSCSE 300
  301 TQISEKITRQ TKQIQQLNKR EQYWIKRLAR TASEELMNTL KASGKKRAYF MEEEYGTLEL 360
  361 LLQIHKEVSN FLKDDTEGYE IILCGYERQT NTGSLLILSE SGEKIANLAA NLGSILQNLK 420
  421 GGGGKKGGKW QGKITSISNA EFAALSDYLS HDFASC

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) ARC18 ARC35 ARC40 ARP2 ARP3 NIP1 NOP4 POB3 SSZ1 YLR241W YNL040W

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #15 Mitotic 2nd-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YNL040W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..59] deduced N/A No confident structure predictions are available.
    2 View Details [60..375] PSI-BLAST 50.69897 Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS)
    3 View Details [376..456] MSA 4.097997 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle