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Protein Overview: YLL032C

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Krogan NJ, et al. (2006) IRC8 LSM12 RPL38 YLL032C

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YLL032C Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..141] deduced N/A No confident structure predictions are available.
2 View Details [142..358] MSA 2.159989 View MSA. No confident structure predictions are available.
3 View Details [359..554] PSI-BLAST 14.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
4 View Details [555..647] PSI-BLAST 19.69897 Far upstream binding element, FBP, KH3 and KH4 domains
5 View Details [648..745] MSA 2.065989 View MSA. No confident structure predictions are available.
6 View Details [746..825] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • structural constituent of ribosome
  • 6.720012207401 bayes_pls_golite062009
  • structural molecule activity
  • 6.15496287636596 bayes_pls_golite062009
  • transcription regulator activity
  • 3.20568770944756 bayes_pls_golite062009
  • RNA binding
  • 1.82714562401326 bayes_pls_golite062009
  • binding
  • 1.5466198129438 bayes_pls_golite062009
  • nucleic acid binding
  • 1.48613196553259 bayes_pls_golite062009
  • translation initiation factor activity
  • 1.27539679024898 bayes_pls_golite062009
  • DNA binding
  • 0.99813295819535 bayes_pls_golite062009
  • mRNA binding
  • 0.871057743692364 bayes_pls_golite062009
  • transcription termination factor activity
  • 0.76362333646107 bayes_pls_golite062009
  • protein binding
  • 0.523813050066193 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 0.47336621289748 bayes_pls_golite062009
  • transcription factor activity
  • 0.184749183964367 bayes_pls_golite062009
  • catalytic activity
  • 0.10089766806364 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 6.9430052008157E-5 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
  • 4.53756130039297 bayes_pls_golite062009
  • mRNA binding
  • 4.29703395482722 bayes_pls_golite062009
  • nucleic acid binding
  • 3.71927111604413 bayes_pls_golite062009
  • binding
  • 3.03029468866374 bayes_pls_golite062009
  • transcription regulator activity
  • 1.39930706524977 bayes_pls_golite062009
  • DNA binding
  • 1.19211612853211 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.496865429134247 bayes_pls_golite062009
  • transcription factor activity
  • 0.272268621092333 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
    4
    Term Confidence Notes
  • RNA binding
  • 4.53756130039297 bayes_pls_golite062009
  • mRNA binding
  • 4.29703395482722 bayes_pls_golite062009
  • nucleic acid binding
  • 3.71927111604413 bayes_pls_golite062009
  • binding
  • 3.03029468866374 bayes_pls_golite062009
  • transcription regulator activity
  • 1.39930706524977 bayes_pls_golite062009
  • DNA binding
  • 1.19211612853211 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.496865429134247 bayes_pls_golite062009
  • transcription factor activity
  • 0.272268621092333 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle