Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLL032C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..825] | [1..825] |
|
|
1.0E-70 | [88..785] | [296..980] |
|
|
1.0E-70 | [88..748] | [296..914] |
|
|
3.0E-70 | [91..785] | [255..980] |
|
|
8.0E-66 | [81..785] | [244..981] |
|
|
1.0E-65 | [231..747] | [14..524] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MDNFKIYSTV ITTAFLQVPH LYTTNRLWKP IEAPFLVEFL QKRISSKELK NTKAICHIDP 60
61 SWVNLNASFI RDDMISIKAT TDDMDLDAIC RISLPLPMNT NDLTAELEKM KRILLDLSEK 120
121 FNLELIITKE PAYFTPEQTG E
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [142-358] |
1 11 21 31 41 51
| | | | | |
1 SKELCIYVHA LGFRSNLMEC EPQLLAFVDL IKKNGMTLPP QHYIIEPMEL NSYSVLPLYM 60
61 GVDMENFKHI SRAFKTSIYA PSLITLSRDL KANPQIFFSG AVHSLSLLAR KTLRESISVN 120
121 SKSFFYRRLT NITPGKLLFI RKYYQQKVNQ LILKYQSLIR VTNEYIEFQS ISTNLLEMVI 180
181 KNFTIQVLHE IVEVQISLNE NCAMSPELII DSFFGHT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural constituent of ribosome | 6.720012207401 | bayes_pls_golite062009 |
| structural molecule activity | 6.15496287636596 | bayes_pls_golite062009 |
| transcription regulator activity | 3.20568770944756 | bayes_pls_golite062009 |
| RNA binding | 1.82714562401326 | bayes_pls_golite062009 |
| binding | 1.5466198129438 | bayes_pls_golite062009 |
| nucleic acid binding | 1.48613196553259 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| DNA binding | 0.99813295819535 | bayes_pls_golite062009 |
| mRNA binding | 0.871057743692364 | bayes_pls_golite062009 |
| transcription termination factor activity | 0.76362333646107 | bayes_pls_golite062009 |
| protein binding | 0.523813050066193 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.474251377131502 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.47336621289748 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.47336621289748 | bayes_pls_golite062009 |
| transcription factor activity | 0.184749183964367 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 6.9430052008157E-5 | bayes_pls_golite062009 |
|
Region A: Residues: [359-554] |
1 11 21 31 41 51
| | | | | |
1 GNQIVVITPK EDSFNQLIVV GNQSSTDEAS DTSILHYLSD FIMGSNQVIN PNLRQIKAIF 60
61 EIHPDFEDFI SGKKNGKLTR IMELSACLIQ LEMEEEDDNL YLNLVSDSFP DFKESFKNVI 120
121 NEFPAEESFF IPEVCHRPII GTGGSLIQAT MRKHNVFIQF SNSFNLPQNK ISMIRYDNVI 180
181 IRCPRKNKAN ICLAKN
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1e3pA_ |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.53756130039297 | bayes_pls_golite062009 |
| mRNA binding | 4.29703395482722 | bayes_pls_golite062009 |
| nucleic acid binding | 3.71927111604413 | bayes_pls_golite062009 |
| binding | 3.03029468866374 | bayes_pls_golite062009 |
| transcription regulator activity | 1.39930706524977 | bayes_pls_golite062009 |
| DNA binding | 1.19211612853211 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.496865429134247 | bayes_pls_golite062009 |
| transcription factor activity | 0.272268621092333 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [555-647] |
1 11 21 31 41 51
| | | | | |
1 DLKQIVQEYD SLQSKTLIRF SSGQYRHILH VNGQKNIIGQ IEKNENVYIM IPLKEPLDGT 60
61 SQLSIQGNDE NASRAANELV NSAFGYEYEF KID
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 1j4wA_ |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.53756130039297 | bayes_pls_golite062009 |
| mRNA binding | 4.29703395482722 | bayes_pls_golite062009 |
| nucleic acid binding | 3.71927111604413 | bayes_pls_golite062009 |
| binding | 3.03029468866374 | bayes_pls_golite062009 |
| transcription regulator activity | 1.39930706524977 | bayes_pls_golite062009 |
| DNA binding | 1.19211612853211 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.496865429134247 | bayes_pls_golite062009 |
| transcription factor activity | 0.272268621092333 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [648-745] |
1 11 21 31 41 51
| | | | | |
1 QEIDPNKEYE FYNLIVVPFL QIMNIIVTFE KDLITFTFEK DTNENTLTKA IELLSNYLET 60
61 QKTKIIFKKI IKKFVLGSAS SKSNTSNSNT NGNFRSMN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [746-825] |
1 11 21 31 41 51
| | | | | |
1 NAKSRTTIDN TSQSGASPQR HKMPVITTVG GAQAIKGYIP NTYYNGYGYG YGYTYEYDYN 60
61 YANSNKAQTN NRHKYQNGRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
