| General Information: |
|
| Name(s) found: |
VPS35 /
YJL154C
[SGD]
|
| Description(s) found:
Found 27 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 944 amino acids |
Gene Ontology: |
|
| Cellular Component: |
endosome
[IPI ]
retromer complex [IPI ]
|
| Biological Process: |
protein retention in Golgi apparatus
[IMP]
retrograde transport, endosome to Golgi [IPI ]
|
| Molecular Function: |
protein binding
[IGI][IMP]
protein transporter activity [IMP ][IPI]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MAYADSPENA IAVIKQRTAL MNRCLSQHKL MESLQHTSIM LTELRNPNLS PKKYYELYVI 60
61 IFDSLTNLST YLIENHPQNH HLADLYELVQ YTGNVVPRLY LMITVGTSYL TFNEAPKKEI 120
121 LKDMIEMCRG VQNPIRGLFL RYYLSQRTKE LLPEDDPSFN SQFIMNNFIE MNKLWVRLQH 180
181 QGPLRERETR TRERKELQIL VGSQLVRLSQ IIDDNFQMYK QDILPTILEQ VIQCRDLVSQ 240
241 EYLLDVICQV FADEFHLKTL DTLLQTTLHL NPDVSINKIV LTLVDRLNDY VTRQLEDDPN 300
301 ATSTNAYLDM DVFGTFWDYL TVLNHERPDL SLQQFIPLVE SVIVLSLKWY PNNFDNLNKL 360
361 FELVLQKTKD YGQKNISLES EHLFLVLLSF QNSKLQLTSS TTAPPNSPVT SKKHFIFQLI 420
421 SQCQAYKNIL ALQSISLQKK VVNEIIDILM DREVEEMADN DSESKLHPPG HSAYLVIEDK 480
481 LQVQRLLSIC EPLIISRSGP PANVASSDTN VDEVFFNRHD EEESWILDPI QEKLAHLIHW 540
541 IMNTTSRKQT MKNKIQFSLE AQLEILLLIK SSFIKGGINV KYTFPAIITN FWKLMRKCRM 600
601 IQEYLLKKRP DNKTLLSHYS NLLKQMFKFV SRCINDIFNS CNNSCTDLIL KLNLQCAILA 660
661 DQLQLNEISY DFFSQAFTIF EESLSDSKTQ LQALIYIAQS LQKTRSLYKE AYYDSLIVRC 720
721 TLHGSKLLKK QDQCRAVYLC SHLWWATEIS NIGEEEGITD NFYRDGKRVL ECLQRSLRVA 780
781 DSIMDNEQSC ELMVEILNRC LYYFIHGDES ETHISIKYIN GLIELIKTNL KSLKLEDNSA 840
841 SMITNSISDL HITGENNVKA SSNADDGSVI TDKESNVAIG SDGTYIQLNT LNGSSTLIRG 900
901 VVATASGSKL LHQLKYIPIH HFRRTCEYIE SQREVDDRFK VIYV |
| PUBLICATION | TOPOLOGY | COCOMPLEXED PROTEINS | |
| View Details | Riffle et al. (2010) (Unpublished Data) |
|
PEP8 VPS17 VPS29 VPS35 VPS5 |
| View Details | (MIPS) Mewes HW, et al. (2004) |
|
PEP8 VPS29 VPS35 |
| View Details | Krogan NJ, et al. (2006) |
|
MIA40 MUK1 PEP8 VPS17 VPS29 VPS35 VPS5 |
| View Details | Gavin AC, et al. (2006) |
|
VPS29 VPS35 VPS5 |
| View Details | Gavin AC, et al. (2002) |
|
VPS29 VPS35 |
| View Details | Ho Y, et al. (2002) |
|
CIC1 ERB1 RPF1 SRP54 TMA108 VPS35 YBR242W YPD1 YTM1 |
| View Details | Qiu et al. (2008) |
|
ATG20 DID4 PEP8 SNX41 VPS17 VPS29 VPS35 VPS5 |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | Sample 3 - cpn + atp, from june 2005 | McCusker D, et al (2007) | |
| View Run | #29 Asynchronous Prep5-TiO2 Flowthrough | Keck JM, et al. (2011) |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
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| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..273] |  |
N/A | No confident structure predictions are available. |
| 2 | View Details | [274..892] | |
2.014861 | View MSA. No confident structure predictions are available. |
| 3 | View Details | [893..944] | |
N/A | No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.97 |
Source: Reynolds et al. (2008)