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Protein Overview: gi|110739500, gi...

General Information:
Name(s) found: gi|42568712 [NCBI NR]
gi|34365727 [NCBI NR]
gi|27311605 [NCBI NR]
gi|110741326 [NCBI NR]
gi|110739500 [NCBI NR]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • gi|42568712|ref|NP_201066.2| transportin-SR-related [Arabidopsis thaliana] [NCBI NR]
  • gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] [NCBI NR]
  • gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 958 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    cytoplasm [IEA]
    nuclear pore [IEA]
    Biological Process: intracellular protein transport [IEA]
    protein import into nucleus, docking [IEA]
    Molecular Function: protein transporter activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQNAVKEA LNALYHHPDD TVRVHADRWL QNFQGTLDAW QVADNLLHDS SSNLETLIFC  60
   61 SQTLRSKVQR DFEELPPGAF QKLRQSLTTL LKKFHKGPPK VRTQISIAVA ALAVHVPAAD 120
  121 WGDGGIISWL RDEMHMHPEY VPGFLELLTV LPEETFNYKI AARPDRRRQF EKELTSQMEA 180
  181 ALSILSACLK ISELKEQVLE AFASWLRLRH GIPGTVLACH PLVHAALSSL NCDPLSEASV 240
  241 NVISELIHHT ASPSSGGISA QTPLIQVIVP QILSLQAHLR DSSKDEEDVK AIGRLFADVG 300
  301 DSYVELIATG SDEPMVIVHA LLEVTAHPEF DIASMTFNFW HSLQLMLTKR ESYSSLGSEA 360
  361 SIEVERNRRL HIFQPAYQSL VSLVGFRVQY PEDYQGLSYE DLKEFKQTRY AVADVLIDAA 420
  421 LILGGDTTLK ILYMKLLEAN AQTGNNFQDW RPAEAILFCI WAISNYVSVV EAEVMPQVMA 480
  481 LLQNLPQQAQ LLQTACLLVG AYSKWLNAAP ASVSILPSII RILMSGMGTS EDCAAAAALA 540
  541 FRHTCDDCRK NLCGYFEDLF NIYCMAINGG GGYKVSAEDS LNLVEALGMV VTELPLDQAK 600
  601 GALEKLCFSA ASPLEEAAKE DLEKKHAREL TVHIDRFAFL FRYVNHPEAV AAEINKHWAI 660
  661 FRVIFDARPW DMRTMESLCR ACKYAVRTSG RYIIDTIGEM LEKIQFHYQQ HHQPCFLYLS 720
  721 SEVIKIFGSD PSCAVYLKNL IETLFAHTTC LMTSIKEVTA RPDIADDCFL LASRCLRYCP 780
  781 HLFIPSPIFP ALVNCAMIGI TVQHREACHS ILTFLTDIFD LEKSVNEEQF VRIRDNIIIP 840
  841 RGATITRILI ASLAGALPSS RLDTVTYSLL ALTRTYRLQA VSWAKESVSL IPRTALTETE 900
  901 STKFLQALSD IAYGADVNSL IGQVEELSDV CRRNRTVQEL VQAALKPLEL NLVTAPVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..958] PSI-BLAST 107.0 Karyopherin beta2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.58709163830613 bayes_pls_golite062009
  • binding
    		•  3.0667965351474 bayes_pls_golite062009
  • transporter activity
    		•  2.92319684675174 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.74745843355294 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.74547353635661 bayes_pls_golite062009
  • RNA binding
    		•  2.62683106046883 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  2.13470398426489 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  1.91487015967262 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.90912542848632 bayes_pls_golite062009
  • DNA binding
    		•  1.77040152722002 bayes_pls_golite062009
  • protein binding
    		•  1.73688475473996 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.65364344577652 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.6217303285315 bayes_pls_golite062009
  • transcription factor activity
    		•  1.27944481949335 bayes_pls_golite062009
  • mRNA binding
    		•  1.24616647164637 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.20870827474803 bayes_pls_golite062009
  • RNA cap binding
    		•  0.85485270555676 bayes_pls_golite062009
  • signal sequence binding
    		•  0.57106697498903 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.100181463251306 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0797305392056347 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.052195223119721 bayes_pls_golite062009
  • transcription factor binding
    		•  0.00210118982863072 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle