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Protein Overview: gi|30259414, gi|...

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..388] PSI-BLAST 87.522879 Crystal Structure of human HDAC8 complexed with Trichostatin A

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • protein deacetylase activity
  • 8.30253165870598 bayes_pls_golite062009
  • histone deacetylase activity
  • 8.15565546801168 bayes_pls_golite062009
  • deacetylase activity
  • 7.03701712157089 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
  • 5.1590771772441 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
  • 4.55604795512334 bayes_pls_golite062009
  • hydrolase activity
  • 2.11707868768295 bayes_pls_golite062009
  • binding
  • 1.80085909665797 bayes_pls_golite062009
  • NAD-dependent protein deacetylase activity
  • 1.70542083582769 bayes_pls_golite062009
  • NAD-dependent histone deacetylase activity
  • 1.70542083582769 bayes_pls_golite062009
  • catalytic activity
  • 1.68836803454021 bayes_pls_golite062009
  • transcription factor binding
  • 0.97845198395624 bayes_pls_golite062009
  • protein binding
  • 0.932924391997764 bayes_pls_golite062009
  • transcription regulator activity
  • 0.886023992169206 bayes_pls_golite062009
  • transcription repressor activity
  • 0.59175938803562 bayes_pls_golite062009
  • nucleic acid binding
  • 0.480948003342456 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
  • 0.436815987851993 bayes_pls_golite062009
  • histone methyltransferase activity
  • 0.396822865624511 bayes_pls_golite062009
  • DNA binding
  • 0.20091997728132 bayes_pls_golite062009
  • chromatin binding
  • 0.0976127981819213 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle