YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24346031, gi|...

General Information:
Name(s) found: gi|24372138 [NCBI NR]
gi|24346031 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372138|ref|NP_716180.1| sensory box histidine kinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346031|gb|AAN53625.1|AE015501_8 sensory box histidine kinase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 717 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: signal transduction [ISSLink to PubMed article]
    Molecular Function: two-component sensor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTDRFPESF GPPKSFFISV VRSSWLMLVA ALTFMGISWF VLQEYLRERG EERFNNNVQE  60
   61 LSEAVSRRMT AYEQVLRGGV GLFLSSRGVT RSEWQTYVAN ARLSDYYPGI QGLGFAELVT 120
  121 PATLDEFTQQ VQQEGFSDFR ITPIGDRELY CVIKYLEPFD WRNQRAFGFD MCSEATRRSA 180
  181 ILKAITSGLP KVSGKVTLVQ ETPENTQAGV LMYVPLYRGQ PMTEVERMQQ AIGVVYALFR 240
  241 MNDLMQGIMG KRFSGIKLAI YDGSEANRTH LMFSSDPKLP SSKDVFYQSQ LETMEGQVWR 300
  301 IDVSSESRFI SRAEQTRSVW LQVIGCAFIL ALFYAVISMA RNRYQESMLT AELIANEKRF 360
  361 RLIIEASPSA LFMVDKTGVI TLVNTQGERL FGYTREELLG RSINMLLPET LREIHQQHLS 420
  421 HYLVHPIAKN MSMRDDLLGC CKDGTPLAVE VGLTPVHFSN GIYILTTINN ISERKRIEAQ 480
  481 RIEHMAELER INQELDRFAY IASHDLKSPL RGIEQLTTWL SEDLVDNTNE NVQKYLGLIQ 540
  541 NRIQRMVRLL DGLLTFSRIG RVDNEMVEVD SRQLVEDMFA LVAPPQGFEL VLEGDFPHFK 600
  601 TVKTLLELVV RNLISNAIKH HDRGFGVLKV LCETKNTYYW FSVVDDGPGI SSEFQLKVFE 660
  661 MFQTLRPRDE VEGSGLGLSL VKKTVDSLGG KIQLESVGRG CCFRFSWPIH IVNKEGI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] FFAS03 1.04 No description for 2p7jA was found.
    2 View Details [324..478] PSI-BLAST 8.69897 Histidine kinase FixL heme domain
    3 View Details [479..717] PSI-BLAST 43.39794 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • two-component sensor activity
    		•  2.88093868237858 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  2.86151216540335 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  2.80671328721504 bayes_pls_golite062009
  • protein kinase activity
    		•  1.74105675066805 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.62873572477094 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.58981311381645 bayes_pls_golite062009
  • kinase activity
    		•  1.5133458700147 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.31628115739307 bayes_pls_golite062009
  • signal transducer activity
    		•  1.10204821596482 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.10204821596482 bayes_pls_golite062009
  • catalytic activity
    		•  0.970922685016416 bayes_pls_golite062009
  • transferase activity
    		•  0.839270468560673 bayes_pls_golite062009
  • binding
    		•  0.704248066961418 bayes_pls_golite062009
    2
    Term Confidence Notes
  • ion transmembrane transporter activity
    		•  1.94020112661684 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.88422125389203 bayes_pls_golite062009
  • binding
    		•  1.79230776794479 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.70629448457771 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.55042643398568 bayes_pls_golite062009
  • DNA binding
    		•  1.54206275665781 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.45691562840107 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41817054839611 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.31850321187865 bayes_pls_golite062009
  • transcription factor activity
    		•  1.12946889905444 bayes_pls_golite062009
  • protein binding
    		•  1.0133195984081 bayes_pls_golite062009
  • potassium channel activity
    		•  0.93265112299626 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  0.92661046549451 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  0.926512767264521 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.92204538811959 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  0.91469735366704 bayes_pls_golite062009
  • ion channel activity
    		•  0.75430461252947 bayes_pls_golite062009
  • cation channel activity
    		•  0.73262554730695 bayes_pls_golite062009
  • gated channel activity
    		•  0.67217953143815 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.650205954115699 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.64202076714636 bayes_pls_golite062009
  • channel activity
    		•  0.64202076714636 bayes_pls_golite062009
  • two-component sensor activity
    		•  0.58151911764083 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  0.56538125817883 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  0.518111391350209 bayes_pls_golite062009
  • signal transducer activity
    		•  0.441034662376355 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.441034662376355 bayes_pls_golite062009
  • transporter activity
    		•  0.360938622392148 bayes_pls_golite062009
  • catalytic activity
    		•  0.285447488878019 bayes_pls_golite062009
  • transcription factor binding
    		•  0.24293756478811 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.217804199010847 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle