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Protein Overview: gi|18424049, gi|...

General Information:
Name(s) found: gi|28950773 [NCBI NR]
gi|26451944 [NCBI NR]
gi|21593363 [NCBI NR]
gi|18424049 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|28950773|gb|AAO63310.1| At5g57950 [Arabidopsis thaliana] [NCBI NR]
  • gi|26451944|dbj|BAC43064.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21593363|gb|AAM65312.1| 26S proteasome regulatory subunit p27, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|18424049|ref|NP_568872.1| 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: proteasome regulatory particle [ISS]
    Biological Process: intracellular signaling pathway [ISS]
    Molecular Function: protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGANLKAET MALMDKRTAM ETEMNSIVER LCNPGGPGLS GNLIDSEGFP REDIDIPMVR  60
   61 TERRRLAELR SEHGEITEKI NVNIQILHSV RPTSRASSTK DSGPEETSLS GAAVNSLSAS 120
  121 MQTSGFSVTS GPMDVDVVTS IPFAMVDEIN ESSPAAEGGL QLGDQVLKFG NVEGGDNLLQ 180
  181 RLAAEAQSNQ GQAVSVQVMR QGAKVVLSVT PRIWQGRGLL GCHFRLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 29.522879 Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  8.39437658618072 bayes_pls_golite062009
  • endopeptidase activity
    		•  8.14207041625331 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  8.09394010519266 bayes_pls_golite062009
  • hydrolase activity
    		•  5.48883166914036 bayes_pls_golite062009
  • serine hydrolase activity
    		•  3.10188179747851 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  3.09356744910628 bayes_pls_golite062009
  • serine-type endopeptidase activity
    		•  2.91265669601085 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.16834620509051 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.1333716364785 bayes_pls_golite062009
  • DNA binding
    		•  1.94746941980264 bayes_pls_golite062009
  • catalytic activity
    		•  1.40927913545237 bayes_pls_golite062009
  • transcription activator activity
    		•  1.37255187012662 bayes_pls_golite062009
  • binding
    		•  1.30738106455622 bayes_pls_golite062009
  • protein binding
    		•  1.30414885212044 bayes_pls_golite062009
  • transporter activity
    		•  0.666562078558936 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.510205657363692 bayes_pls_golite062009
  • enzyme binding
    		•  0.46071739042312 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.342817187733892 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.299572882681276 bayes_pls_golite062009
  • structural molecule activity
    		•  0.153277808949873 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.141613198202921 bayes_pls_golite062009
  • PDZ domain binding
    		•  0.0604467745298803 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0283953080227368 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0187659836234897 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle