| Protein: | LONM4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 942 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LONM4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
538.0 | [0..1] | [941..46] |
|
Region A: Residues: [1-691] |
1 11 21 31 41 51
| | | | | |
1 MLKFLTPTAY ASHHVTPATR FRSTPVKNLL FKQLTLLTGW NRSSYELGRR SFSSDLDSDT 60
61 KSSTTTVSAK PHLDDCLTVI ALPLPHKPLI PGFYMPIYVK DPKVLAALQE SRRQQAPYAG 120
121 AFLLKDDASS DSSSSSETEN ILEKLKGKEL INRIHEVGTL AQISSIQGEQ VILIGHRQLR 180
181 ITEMVSESED PLTVKVDHLK DKPYDKDDDV IKATYFQVMS TLRDVLKTTS LWRDHVRTYT 240
241 QACSLHIWHC LRHIGEFNYP KLADFGAGIS GANKHQNQGV LEELDVHKRL ELTLELVKKE 300
301 VEINKIQESI AKAVEEKFSG DRRRIILKEQ INAIKKELGG ETDSKSALSE KFRGRIDPIK 360
361 DKIPGHVLKV IEEELKKLQL LETSSSEFDV TCNYLDWLTV LPWGNFSDEN FNVLRAEKIL 420
421 DEDHYGLSDV KERILEFIAV GGLRGTSQGK IICLSGPTGV GKTSIGRSIA RALDRKFFRF 480
481 SVGGLSDVAE IKGHRRTYIG AMPGKMVQCL KNVGTENPLV LIDEIDKLGV RGHHGDPASA 540
541 MLELLDPEQN ANFLDHYLDV PIDLSKVLFV CTANVTDTIP GPLLDRMEVI TLSGYITDEK 600
601 MHIARDYLEK TARRDCGIKP EQVDVSDAAF LSLIEHYCRE AGVRNLQKQI EKIFRKIALK 660
661 LVRKAASTEV PRISDDVTTD TEETKSLAKT D
|
| Detection Method: |  |
| Confidence: | 110.0 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrogen ion transmembrane transporter activity | 3.92757313803074 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 3.76622182173583 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 3.49412822840068 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.46458392648207 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.411171656739 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 3.09072076169796 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 2.99135301692379 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.92624263342912 | bayes_pls_golite062009 |
| hydrolase activity | 2.18454736627863 | bayes_pls_golite062009 |
| binding | 2.0681607836408 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 1.84050240798436 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.81138802583782 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.78927528875848 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.78903889318615 | bayes_pls_golite062009 |
| helicase activity | 1.40781177352978 | bayes_pls_golite062009 |
| ATPase activity | 1.18431260772292 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.09000822067541 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA helicase activity | 0.86836375892673 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.5607032154839 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.5607032154839 | bayes_pls_golite062009 |
| motor activity | 0.50661339105747 | bayes_pls_golite062009 |
| nucleic acid binding | 0.503971340374059 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.384988511775694 | bayes_pls_golite062009 |
| protein binding | 0.193768631623192 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| nucleobase, nucleoside, nucleotide kinase activity | 0.175442402308287 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.133736530545575 | bayes_pls_golite062009 |
| DNA binding | 0.111331583742205 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0700789521444061 | bayes_pls_golite062009 |
|
Region A: Residues: [692-746] |
1 11 21 31 41 51
| | | | | |
1 LESPETSAEG STVLTDELAT GDPTESTTEQ SGEVAETVEK YMIDESNLSD YVGKP
|
| Detection Method: | |
| Confidence: | 14.045757 |
| Match: | 1xxiB |
| Description: | ADP Bound E. coli Clamp Loader Complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [747-942] |
1 11 21 31 41 51
| | | | | |
1 VFQEEKIYEQ TPVGVVMGLA WTSMGGSTLY IETTFVEEGE GKGGLHITGR LGDVMKESAE 60
61 IAHTVARRIM LEKEPENKLF ANSKLHLHVP AGATPKDGPS AGCTMITSLL SLALKKPVRK 120
121 DLAMTGEVTL TGRILAIGGV KEKTIAARRS QVKVIIFPEA NRRDFDELAR NVKEGLEVHF 180
181 VDEYEQIFEL AFGYDH
|
| Detection Method: | |
| Confidence: | 32.09691 |
| Match: | 1rr9A |
| Description: | Catalytic domain of E.coli Lon protease |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| mitochondrial heavy strand promoter sense binding | 7.07169438832198 | bayes_pls_golite062009 |
| DNA polymerase binding | 7.07169438832198 | bayes_pls_golite062009 |
| mitochondrial light strand promoter anti-sense binding | 7.07169438832198 | bayes_pls_golite062009 |
| mitochondrial heavy strand promoter anti-sense binding | 7.07169438832198 | bayes_pls_golite062009 |
| mitochondrial light strand promoter sense binding | 7.07169438832198 | bayes_pls_golite062009 |
| ribonuclease activity | 2.03745175432755 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.38482286547386 | bayes_pls_golite062009 |
| hydrolase activity | 1.18773479836745 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 1.16726450662143 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.1604717842042 | bayes_pls_golite062009 |
| structural molecule activity | 1.14918348313691 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.13566902804592 | bayes_pls_golite062009 |
| ATP-dependent peptidase activity | 0.99253423929971 | bayes_pls_golite062009 |
| binding | 0.923114523007774 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| peptidase activity | 0.46678532223973 | bayes_pls_golite062009 |
| nuclease activity | 0.315907493060144 | bayes_pls_golite062009 |
| endopeptidase activity | 0.227419965943609 | bayes_pls_golite062009 |
| protein binding | 0.214066724623027 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.161393552073973 | bayes_pls_golite062009 |
| nucleic acid binding | 0.145830549540622 | bayes_pls_golite062009 |
| exonuclease activity | 0.118186133308559 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.114504249104206 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.0709817198603016 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 6.9430052008157E-5 | bayes_pls_golite062009 |
