| Protein: | gi|15232736, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 777 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15232736, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
501.0 | [0..7] | [763..132] |
|
Region A: Residues: [1-252] |
1 11 21 31 41 51
| | | | | |
1 MGFYGGGSMA SGRPESTGID SLGIGKILAV YIKDNENLAI DEDKLQLTAE LIRVFSASPG 60
61 RDIVSQVNED GGGSFSLSLD LQQFKKISDI ENFFINLEDN PKGVIPCMNA AVHKVLFDQW 120
121 ETNEFENVMK INVRLHNYPE SSISLKNLRA AYIGKLVTVH GTVVKVSTVK PLVTQMAFDC 180
181 GKCKTGITRE FTDGKFSPPL KCDSHGCKSK TFTPIRSSAQ TIDFQKIRVQ ELQKPEDHEE 240
241 GRVPRTVECE LM
|
| Detection Method: |  |
| Confidence: | 39.69897 |
| Match: | 1ltlA |
| Description: | DNA replication initiator (cdc21/cdc54) N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.99127970564994 | bayes_pls_golite062009 |
| DNA binding | 3.53568546959418 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.06066809614422 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.0183551365402 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.13063800565247 | bayes_pls_golite062009 |
| structural molecule activity | 1.9177190829469 | bayes_pls_golite062009 |
| DNA replication origin binding | 1.84819558112187 | bayes_pls_golite062009 |
| transcription regulator activity | 1.84350127337404 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 1.79151665830435 | bayes_pls_golite062009 |
| telomeric DNA binding | 1.7847835613194 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 1.48033977789232 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 0.952569279670437 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| ribonuclease activity | 0.62994126331969 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| translation regulator activity | 0.515576958825022 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.468402630523277 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| protein binding | 0.152645195799531 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [253-347] |
1 11 21 31 41 51
| | | | | |
1 EDLVDICIPG DVVTVTGIIG VINNYMDIGG GKSKTKNQGF YYLFIEAVSV KNTKRQSAFE 60
61 NSEDSSSSAQ TADVGDLYSF SQRDLEFIVK FKEEY
|
| Detection Method: | |
| Confidence: | 37.39794 |
| Match: | 1ny5A |
| Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 6.53594658514943 | bayes_pls_golite062009 |
| DNA binding | 4.23378162793777 | bayes_pls_golite062009 |
| nucleic acid binding | 3.98185277824074 | bayes_pls_golite062009 |
| transcription factor activity | 3.46635567406922 | bayes_pls_golite062009 |
| signal transducer activity | 3.29384659525629 | bayes_pls_golite062009 |
| molecular transducer activity | 3.29384659525629 | bayes_pls_golite062009 |
| two-component response regulator activity | 2.59441224418158 | bayes_pls_golite062009 |
| binding | 2.56389923453102 | bayes_pls_golite062009 |
|
Region A: Residues: [348-777] |
1 11 21 31 41 51
| | | | | |
1 GSDTFRRILH SVCPSIYGHE IVKAGITLSL FGGVRKHSMD RNKVPVRGDI HVIIVGDPGL 60
61 GKSQLLQAAA AISPRGIYVC GNATTRAGLT VAVVKDSMTN DYAFEAGAMV LADGGLCCID 120
121 EFDKMTTEHQ ALLEAMEQQC VSVAKAGLVA SLSARTSVIA AANPVGGHYN RAKTVNENLK 180
181 MSAALLSRFD LVFILLDKPD ELLDKQVSEH IMSHHRMLGM QTCMQKGILY FQDCGWTLRK 240
241 MTTFLRFLAN CLGNIFPMHG ILMSKDAGEI IQKFYLKLRD HNTSADSTPI TARQLESLVR 300
301 LAQARARVDL REEITVQDAM DVVEIMKESL YDKLIDEHGV VDFGRSGGMS QQKEAKRFLS 360
361 ALDKQSELQQ KDCFSVSEMY SLADRIGLRV PDIDTFLENL NIAGYLLKKG PKTYQVLSSS 420
421 YSRSQSSRSR
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 2ce7A |
| Description: | EDTA treated |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 4.91429252297969 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 4.80695929076807 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| nucleic acid binding | 2.21184938313192 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| DNA replication origin binding | 1.62491387774159 | bayes_pls_golite062009 |
| motor activity | 1.34882329548339 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| transcription factor activity | 0.697256579145077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| microfilament motor activity | 0.2184107989371 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
