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View Structure Prediction Details

Protein: psm3
Organism: Schizosaccharomyces pombe
Length: 1194 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psm3.

Description E-value Query
Range		 Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
 373.0 [0..17] [1043..1653]
gi|116059664 - gi|116059664|emb|CAL55371.1| putative chromosome associated protein (ISS) [Ostreococcus tauri]
 358.0 [0..1] [1192..367]
gi|50549059, gi|... - gi|50549059|ref|XP_502000.1| YALI0C19129p [Yarrowia lipolytica], gi|49647867|emb|CAG82320.1| unnamed...
gi|49647867 - gi|49647867|emb|CAG82320.1| YALI0C19129p [Yarrowia lipolytica]
 329.0 [0..3] [1176..318]
gi|169783320 - gi|169783320|ref|XP_001826122.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83774866 - gi|83774866|dbj|BAE64989.1| unnamed protein product [Aspergillus oryzae]
 327.0 [0..1] [1191..229]
gi|115398574, gi... - gi|115398574|ref|XP_001214876.1| hypothetical protein ATEG_05698 [Aspergillus terreus NIH2624], gi|1...
 326.0 [0..1] [1176..240]
gi|109048435 - gi|109048435|ref|XP_001098705.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1 isof...
 323.0 [0..1] [1188..56]
gi|114590136 - gi|114590136|ref|XP_001157803.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1 isof...
 322.0 [0..1] [1188..57]
gi|88175825, gi|... - gi|88175825|gb|EAQ83293.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51], gi|1162...
 321.0 [0..3] [1176..233]
gi|27227805 - gi|27227805|emb|CAD59411.1| SMC3 protein [Oryza sativa]
 321.0 [0..1] [1193..1]

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Predicted Domain #1
Region A:
Residues: [1-186] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYITKIVIQG FKSYKDYTVI EPLSPHHNVI VGRNGSGKSN FFAAIRFVLS DAYTHLSREE  60
   61 RQALLHEGPG ATVMSAYVEV TFANADNRFP TGKSEVVLRR TIGLKKDEYS LDKKTVSKTE 120
  121 VINLLESAGF SRSNPYYIVP QGRVTSLTNA KDSERLELLK EVAGTQIYEN RRAESNKIMD 180
  181 ETIQKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.154902
Match: 1xewX
Description: Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
microtubule motor activity 4.51968578934603 bayes_pls_golite062009
motor activity 4.04927796049806 bayes_pls_golite062009
DNA-dependent ATPase activity 2.72462789867829 bayes_pls_golite062009
tubulin binding 2.67743463093593 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
microtubule binding 2.59155206524122 bayes_pls_golite062009
cytoskeletal protein binding 2.4101693596493 bayes_pls_golite062009
DNA helicase activity 2.2817164193758 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.16381244011837 bayes_pls_golite062009
pyrophosphatase activity 2.13284212711072 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.11265775498161 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.11046854230259 bayes_pls_golite062009
ATP-dependent DNA helicase activity 1.88455339138556 bayes_pls_golite062009
actin binding 1.75397031486306 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.71108735370276 bayes_pls_golite062009
helicase activity 1.70242731830224 bayes_pls_golite062009
hydrolase activity 1.66122526893602 bayes_pls_golite062009
ATPase activity 1.53315090215319 bayes_pls_golite062009
small conjugating protein ligase activity 1.48507469226102 bayes_pls_golite062009
plus-end-directed microtubule motor activity 1.38366133153678 bayes_pls_golite062009
protein-DNA loading ATPase activity 1.29640539057136 bayes_pls_golite062009
purine ribonucleotide binding 1.2935968641033 bayes_pls_golite062009
ribonucleotide binding 1.2935353851804 bayes_pls_golite062009
purine nucleotide binding 1.29138695385133 bayes_pls_golite062009
nucleotide binding 1.28669586915546 bayes_pls_golite062009
microfilament motor activity 1.20923670094205 bayes_pls_golite062009
ATP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 1.14622346285179 bayes_pls_golite062009
DNA clamp loader activity 1.12431517057397 bayes_pls_golite062009
nucleic acid binding 1.08697924060619 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ATP binding 0.98146619596929 bayes_pls_golite062009
adenyl ribonucleotide binding 0.949788783884952 bayes_pls_golite062009
adenyl nucleotide binding 0.931486373329219 bayes_pls_golite062009
acid-amino acid ligase activity 0.899234598488971 bayes_pls_golite062009
structure-specific DNA binding 0.782430219754236 bayes_pls_golite062009
actin filament binding 0.728264616959762 bayes_pls_golite062009
DNA binding 0.702147676354075 bayes_pls_golite062009
kinase activity 0.691112783105676 bayes_pls_golite062009
double-stranded DNA binding 0.6071273686445 bayes_pls_golite062009
bubble DNA binding 0.572969182910824 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.499834566483656 bayes_pls_golite062009
recombinase activity 0.45851158693664 bayes_pls_golite062009
RNA helicase activity 0.34746349346164 bayes_pls_golite062009
centromeric DNA binding 0.322818640526369 bayes_pls_golite062009
transcription regulator activity 0.312171320541728 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.30832907234141 bayes_pls_golite062009
RNA-dependent ATPase activity 0.29532978396745 bayes_pls_golite062009
four-way junction helicase activity 0.26252931460003 bayes_pls_golite062009
structural constituent of ribosome 0.208665086324262 bayes_pls_golite062009
exodeoxyribonuclease V activity 0.185603938981231 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
3'-5' DNA helicase activity 0.0769112340058804 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0430764033739892 bayes_pls_golite062009
protein kinase activity 0.0364322017534667 bayes_pls_golite062009
structural constituent of cytoskeleton 0.0111338193708552 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [187-499] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKIDELLQYI EERLRELEEE KNDLAVYHKK DNERRCLEYA IYSREHDEIN SVLDALEQDR  60
   61 IAALERNDDD SGAFIQREER IERIKAEITE LNHSLELLRV EKQQNDEDYT NIMKSKVALE 120
  121 LQSSQLSRQI EFSKKDESSK LNILSELESK ISEKENELSE ILPKYNAIVS EADDLNKRIM 180
  181 LLKNQKQSLL DKQSRTSQFT TKKERDEWIR NQLLQINRNI NSTKENSDYL KTEYDEMENE 240
  241 LKAKLSRKKE IEISLESQGD RMSQLLANIT SINERKENLT DKRKSLWREE AKLKSSIENV 300
  301 KDDLSRSEKA LGT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.9
Match: 1c1gA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [500-649] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMDRNTSNGI RAVKDIAERL KLEGYYGPLC ELFKVDNRFK VAVEATAGNS LFHIVVDNDE  60
   61 TATQILDVIY KENAGRVTFM PLNKLRPKAV TYPDASDALP LIQYLEFDPK FDAAIKQVFS 120
  121 KTIVCPSIET ASQYARSHQL NGITLSGDRS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.13
Match: 1gxlA
Description: Smc hinge domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.91859588671053 bayes_pls_golite062009
protein heterodimerization activity 1.04211475755928 bayes_pls_golite062009
protein binding 1.02696508439754 bayes_pls_golite062009
nucleic acid binding 0.832846345187777 bayes_pls_golite062009
structure-specific DNA binding 0.76561882762468 bayes_pls_golite062009
protein dimerization activity 0.734314999998814 bayes_pls_golite062009
DNA binding 0.693468729072494 bayes_pls_golite062009
double-stranded DNA binding 0.489361130553895 bayes_pls_golite062009
DNA secondary structure binding 0.370893450957454 bayes_pls_golite062009
catalytic activity 0.265320175609019 bayes_pls_golite062009
ATP binding 0.161090462621035 bayes_pls_golite062009
adenyl ribonucleotide binding 0.132019153736693 bayes_pls_golite062009
adenyl nucleotide binding 0.123699115804833 bayes_pls_golite062009
sequence-specific DNA binding 0.00495036379814584 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [650-1037] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKGALTAGY RDYRNSRLDA IKNVKTYQIK FSDLQESLEK CRSEIESFDQ KITACLDDLQ  60
   61 KAQLSLKQFE RDHIPLKDEL VTITGETTDL QESMHHKSRM LELVVLELHT LEQQANDLKS 120
  121 ELSSEMDELD PKDVEALKSL SGQIENLSHE FDAIIKERAH IEARKTALEY ELNTNLYLRR 180
  181 NPLKAEIGSD NRIDESELNS VKRSLLKYEN KLQIIKSSSS GLEEQMQRIN SEISDKRNEL 240
  241 ESLEELQHEV ATRIEQDAKI NERNAAKRSL LLARKKECNE KIKSLGVLPE EAFIKYVSTS 300
  301 SNAIVKKLHK INEALKDYGS VNKKAYEQFN NFTKQRDSLL ARREELRRSQ ESISELTTVL 360
  361 DQRKDEAIER TFKQVAKSFS EIFVKLVP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.07
Match: 2bsgA
Description: The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1038-1194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGRGELVMNR RSELSQSIEQ DISMDIDTPS QKSSIDNYTG ISIRVSFNSK DDEQLNINQL  60
   61 SGGQKSLCAL TLIFAIQRCD PAPFNILDEC DANLDAQYRS AIAAMVKEMS KTSQFICTTF 120
  121 RPEMVKVADN FYGVMFNHKV STVESISKEE AMAFVEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1xewY
Description: Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle