| Protein: | cbh2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 514 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbh2.
| Description | E-value | Query Range |
Subject Range |
|
|
411.0 | [0..1] | [511..1] |
|
|
411.0 | [0..1] | [511..1] |
|
|
410.0 | [0..2] | [508..3] |
|
|
408.0 | [0..1] | [513..1] |
|
|
405.0 | [0..2] | [508..3] |
|
|
403.0 | [0..1] | [508..2] |
|
|
402.0 | [0..4] | [512..16] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MPPLRRQALT LAEKKAIRKH YFESATKPSQ QELISWFEEH FHKKLAQSTV SSILSSKNEF 60
61 LDNLDAENSQ IRRNRQGKYP ILENALIDWQ TRLQKQDGAI TGNAIKKSAA ELWRRIPEYS 120
121 ELPIPEFSNG WLEKFKKRCL KHGLKLQGES TSVNQG
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | 1iufA |
| Description: | Ars-binding protein 1, ABP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.24134446233807 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| centromeric DNA binding | 1.13545283098583 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.922310816608639 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.922310816608639 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.666799964992178 | bayes_pls_golite062009 |
| actin binding | 0.6102552688489 | bayes_pls_golite062009 |
| histone binding | 0.557787598121402 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.284650049512347 | bayes_pls_golite062009 |
| DNA helicase activity | 0.187022204923867 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.141400887946529 | bayes_pls_golite062009 |
| protein deacetylase activity | 0.13314897698019 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.105174598157041 | bayes_pls_golite062009 |
| histone deacetylase activity | 0.0878521297613482 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.00788099347317628 | bayes_pls_golite062009 |
|
Region A: Residues: [157-407] |
1 11 21 31 41 51
| | | | | |
1 TYEENMVQIQ ELISLFDPKD IFNMDETGLC WKLIPNQSPA SERVKGITRD KARVTVTICC 60
61 NATGSEKAPL WVIGYAKSPR AFRQANAHPD SMDFHWRYNG TARMTTSIME EWLRWFDDLM 120
121 KGRKVLLILD KFVAHECALE NIRNSERKLV NTTVVFLPVN STEIYHPCGQ EIVYAFKSYY 180
181 RKYWLNYMLE EIRLGKNPSK TMNVLKAVRW MIRSWNVDFE PSIIYNCFLR SGLFQNQQPL 240
241 TGPSPETIRI A
|
| Detection Method: | |
| Confidence: | 1.42 |
| Match: | 2f7tA |
| Description: | No description for 2f7tA was found. |
|
Region A: Residues: [408-514] |
1 11 21 31 41 51
| | | | | |
1 VNLQELIGKY LGDKDIFQIE NFINPIEENS ADTNDDIVNQ VAAQFLDERE FETDEEEEES 60
61 QYLLSTKDAI NAINTLLNFQ EQSEDGNVLF TRTLLQFQKV LESRSIV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
