| Protein: | cbp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 522 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbp1.
| Description | E-value | Query Range |
Subject Range |
|
|
470.0 | [0..1] | [522..1] |
|
|
417.0 | [0..1] | [515..2] |
|
|
416.0 | [0..2] | [518..3] |
|
|
410.0 | [0..1] | [510..1] |
|
|
407.0 | [0..2] | [518..3] |
|
|
395.0 | [0..1] | [515..2] |
|
|
395.0 | [0..1] | [515..2] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MGKIKRRAIT EHEKRALRHY FFQLQNRSGQ QDLIEWFREK FGKDISQPSV SQILSSKYSY 60
61 LDNTVEKPWD VKRNRPPKYP LLEAALFEWQ VQQGDDATLS GETIKRAAAI LWHKIPEYQD 120
121 QPVPNFSNGW LEGFRKRHIL HAINE
|
| Detection Method: |  |
| Confidence: | 29.154902 |
| Match: | 1iufA |
| Description: | Ars-binding protein 1, ABP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.24134446233807 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| centromeric DNA binding | 1.13545283098583 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.922310816608639 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.922310816608639 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.666799964992178 | bayes_pls_golite062009 |
| actin binding | 0.6102552688489 | bayes_pls_golite062009 |
| histone binding | 0.557787598121402 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.284650049512347 | bayes_pls_golite062009 |
| DNA helicase activity | 0.187022204923867 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.141400887946529 | bayes_pls_golite062009 |
| protein deacetylase activity | 0.13314897698019 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.105174598157041 | bayes_pls_golite062009 |
| histone deacetylase activity | 0.0878521297613482 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.00788099347317628 | bayes_pls_golite062009 |
|
Region A: Residues: [146-402] |
1 11 21 31 41 51
| | | | | |
1 QPTESVVLNN TEPPNDPLSR VYDVTRLTNI NDIFTMQETG LFWKLVPNGT PEVEDIKGIT 60
61 RFKARITLTV CCNASGTERL PLWVIGYSQS PRVFRAANVK PEVMNFKWRS NGKASMTTAI 120
121 MEEWLRWFDA CMEGRKVILL IDSYTPHLRA VENIRNSGND LRNTTVITLP STSASISQPC 180
181 SEGVIYALKA CYRKHWVQYI LEQNELGRNP YNTTNVLRAI LWLVKAWTTD ISPEIIENAF 240
241 NLSGVLGLFN ESAVTSR
|
| Detection Method: | |
| Confidence: | 1.34 |
| Match: | 2f7tA |
| Description: | No description for 2f7tA was found. |
|
Region A: Residues: [403-522] |
1 11 21 31 41 51
| | | | | |
1 ALDEMIHPLR ELVSEFSVQA AMRIEDFISP SEENIVDSSE DIINQIASQY MDDRAFETDE 60
61 EESTEFQITT KDAMKAIELL LNYEAQQPDG NPAITISLLN YQKLLEARGG NVNLSRLRST 120
121
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
