| Protein: | B-H2-PA |
| Organism: | Drosophila melanogaster |
| Length: | 645 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for B-H2-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
149.0 | [0..3] | [633..57] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MTTMPPEMSA TTAAPVGSAP SATAHHPAAV GGGMPRPASP AVGSNTTTAT ATTATRSRFM 60
61 ITDILAGAAA ASAAAAAAAA ALAAASSGGG RGSPTDSERE QSLVAQHHHH HQQQQQHHHH 120
121 QQQQQQQQH
|
| Detection Method: |  |
| Confidence: | 1.15 |
| Match: | 2bvtA |
| Description: | The structure of a modular endo-beta-1,4-mannanase from Cellulomonas fimi explains the product specificity of glycoside hydrolase family 26 mannanases. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.59063189683655 | bayes_pls_golite062009 |
| protein binding | 1.40069187357924 | bayes_pls_golite062009 |
| ligand-gated channel activity | 1.12064341222676 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 1.12064341222676 | bayes_pls_golite062009 |
| gated channel activity | 1.07009061846204 | bayes_pls_golite062009 |
| cation channel activity | 1.06128106743399 | bayes_pls_golite062009 |
| ion channel activity | 1.05202649422365 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.0312639599585 | bayes_pls_golite062009 |
| channel activity | 1.02722503832082 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.02722503832082 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.558441391308061 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.474611134490695 | bayes_pls_golite062009 |
| actin binding | 0.471997325585296 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.410123587360906 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.35572857442145 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.347698520417586 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.302562057767319 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.23135104785491 | bayes_pls_golite062009 |
| potassium channel activity | 0.111061655187583 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 0.0516610623213176 | bayes_pls_golite062009 |
|
Region A: Residues: [130-345] |
1 11 21 31 41 51
| | | | | |
1 QQAALQQYIV QQQQLLRFER EREREREREH YRERHSPPGN NPYAHHPMPP HLLAHFPPAH 60
61 YAVLQQQQQQ QQQQQHPHPH HLQLERERLE ALHRHGHGLT GDPAQHLSHL SHLSHQQHHP 120
121 HLHHPMHDER SRSPLMLQQL GGNGGNNNNN NNNSSSASNN NNNNNNSASA NSNIISGNSS 180
181 SSNNNNGSGN GNMLLGGPGS SISGDQASTI DDSDSD
|
| Detection Method: | |
| Confidence: | 3.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-448] |
1 11 21 31 41 51
| | | | | |
1 DCGGKDDDGD DSMKNGSSAN GDSSSHLSLS LSKKQRKART AFTDHQLQTL EKSFERQKYL 60
61 SVQDRMELAN KLELSDCQVK TWYQNRRTKW KRQTAVGLEL LAE
|
| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [449-645] |
1 11 21 31 41 51
| | | | | |
1 AGNYAAFQRL YGGATPYLSA WPYAAAAAAQ SPHGATPSAI DIYYRQAAAA AAMQKPSLPA 60
61 SYRMYQSSIP PGMSLPGMPA PPPPGAAPML SGYYAAAAAA AASAGAQQQQ QQPPAASRSP 120
121 ATSQSANSEA DCERTSSSSR QRLITPSPPL NPGSPPHRER INEEEDRERD EERDIERERE 180
181 RERERDEDDE EELALEV
|
| Detection Method: | |
| Confidence: | 0.979 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.94828015862607 | bayes_pls_golite062009 |
| catalytic activity | 1.01989895762614 | bayes_pls_golite062009 |
| ligase activity | 0.64896140325006 | bayes_pls_golite062009 |
| protein binding | 0.458461360580002 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.406646146913593 | bayes_pls_golite062009 |
